Faculty of Chemistry, University of Warsaw, Pasteura 1, 02093 Warsaw, Poland.
J Magn Reson. 2012 Jan;214(1):91-102. doi: 10.1016/j.jmr.2011.10.009. Epub 2011 Oct 20.
The development of non-uniform sampling (NUS) strategies permits to obtain high-dimensional spectra with increased resolution in significantly reduced experimental time. We extended a previously proposed signal separation algorithm (SSA) to process sparse four-dimensional NMR data. It is employed for two experiments carried out for a partially unstructured 114-residue construct of chicken Engrailed 2 protein, namely 4D HCCH-TOCSY and 4D C,N-edited NOESY. The SSA allowed us to obtain high-quality spectra using only as little as 0.16% of the available samples, with low sampling artefacts approaching the thermal noise level in most spectral regions. It is demonstrated that NUS 4D HCCH-TOCSY is dominated by sampling noise and requires efficient artefact suppression. On the other hand, 4D C,N-edited NOESY is a particularly attractive experiment for NUS, as the absence of diagonal peaks renders the problem of artefacts less critical. We also present a transverse-relaxation optimized sequence for HMQC that is especially designed for longer evolution periods in the indirectly detected proton dimension in high-dimensional pulse sequences. In conjunction with novel sampling strategies and efficient processing methods, this improvement enabled us to obtain unique structural information about aliphatic-amide contacts.
非均匀采样 (NUS) 策略的发展允许在显著减少实验时间的情况下获得具有更高分辨率的高维光谱。我们将先前提出的信号分离算法 (SSA) 扩展到稀疏的四维 NMR 数据处理中。它用于对鸡 Engrailed 2 蛋白的一个部分非结构化的 114 残基结构进行的两个实验,即 4D HCCH-TOCSY 和 4D C,N-编辑 NOESY。SSA 允许我们仅使用可用样本的 0.16%,就能获得高质量的光谱,在大多数光谱区域,采样伪影接近热噪声水平。结果表明,NUS 4D HCCH-TOCSY 主要由采样噪声主导,需要有效的伪影抑制。另一方面,4D C,N-编辑 NOESY 是 NUS 特别有吸引力的实验,因为没有对角峰使得伪影问题不那么关键。我们还提出了一种用于 HMQC 的横向弛豫优化序列,该序列专为在高维脉冲序列中间接检测质子维度的较长演化期而设计。结合新颖的采样策略和有效的处理方法,这一改进使我们能够获得关于脂肪酰胺接触的独特结构信息。