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仅选择性氨基酸体内核磁共振:追踪应激过程的强大工具。

Selective Amino Acid-Only in Vivo NMR: A Powerful Tool To Follow Stress Processes.

作者信息

Lane Daniel, Soong Ronald, Bermel Wolfgang, Ning Paris, Dutta Majumdar Rudraksha, Tabatabaei-Anaraki Maryam, Heumann Hermann, Gundy Marcel, Bönisch Holger, Liaghati Mobarhan Yalda, Simpson Myrna J, Simpson André J

机构信息

Environmental NMR Centre, Department of Physical and Environmental Science, University of Toronto, 1265 Military Trail, Toronto, ON, Canada M1C 1A4.

Bruker BioSpin GmbH, Silberstreifen 4, Rheinstetten, Germany.

出版信息

ACS Omega. 2019 May 22;4(5):9017-9028. doi: 10.1021/acsomega.9b00931. eCollection 2019 May 31.

Abstract

In vivo NMR of small C-enriched aquatic organisms is developing as a powerful tool to detect and explain toxic stress at the biochemical level. Amino acids are a very important category of metabolites for stress detection as they are involved in the vast majority of stress response pathways. As such, they are a useful proxy for stress detection in general, which could then be a trigger for more in-depth analysis of the metabolome. H-C heteronuclear single quantum coherence (HSQC) is commonly used to provide additional spectral dispersion in vivo and permit metabolite assignment. While some amino acids can be assigned from HSQC, spectral overlap makes monitoring them in vivo challenging. Here, an experiment typically used to study protein structures is adapted for the selective detection of amino acids inside living (water fleas). All 20 common amino acids can be selectively detected in both extracts and in vivo. By monitoring bisphenol-A exposure, the in vivo amino acid-only approach identified larger fluxes in a greater number of amino acids when compared to published works using extracts from whole organism homogenates. This suggests that amino acid-only NMR of living organisms may be a very sensitive tool in the detection of stress in vivo and is highly complementary to more traditional metabolomics-based methods. The ability of selective NMR experiments to help researchers to "look inside" living organisms and only detect specific molecules of interest is quite profound and paves the way for the future development of additional targeted experiments for in vivo research and monitoring.

摘要

对富含碳-13的小型水生生物进行体内核磁共振正发展成为一种强大的工具,用于在生化水平上检测和解释毒性应激。氨基酸是用于应激检测的非常重要的一类代谢物,因为它们参与了绝大多数应激反应途径。因此,它们通常是应激检测的有用指标,进而可能成为对代谢组进行更深入分析的触发因素。氢-碳异核单量子相干(HSQC)常用于在体内提供额外的光谱分散并允许代谢物归属。虽然一些氨基酸可以从HSQC中归属出来,但光谱重叠使得在体内监测它们具有挑战性。在此,一种通常用于研究蛋白质结构的实验被改编用于选择性检测活的水蚤体内的氨基酸。所有20种常见氨基酸都可以在提取物和体内被选择性检测到。通过监测双酚A暴露,与使用全生物体匀浆提取物的已发表作品相比,仅体内氨基酸方法在更多数量的氨基酸中识别出更大的通量。这表明对活生物体进行仅氨基酸的核磁共振可能是检测体内应激的非常灵敏的工具,并且与更传统的基于代谢组学的方法高度互补。选择性核磁共振实验帮助研究人员“透视”活生物体并仅检测感兴趣的特定分子的能力非常深刻,为未来开展更多用于体内研究和监测的靶向实验铺平了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ad4/6648361/0024624c6bfa/ao-2019-00931z_0006.jpg

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