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量子力学/分子力学结构、羟基视黄醛的对映选择性和光谱学,以及对小白蛱蝶色觉进化的深入了解。

Quantum mechanical/molecular mechanical structure, enantioselectivity, and spectroscopy of hydroxyretinals and insights into the evolution of color vision in small white butterflies.

机构信息

Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA.

出版信息

J Phys Chem B. 2011 Dec 29;115(51):15380-8. doi: 10.1021/jp208107r. Epub 2011 Dec 6.

DOI:10.1021/jp208107r
PMID:22087641
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3249143/
Abstract

Since Vogt's discovery of A(3)-retinal or 3-hydroxyretinal in insects in 1983 and Matsui's discovery of A(4)-retinal or 4-hydroxyretinal in firefly squid in 1988, hydroxyretinal-protein interactions mediating vision have remained largely unexplored. In the present study, A(3)- and A(4)-retinals are theoretically incorporated into squid and bovine visual pigments by use of the hybrid quantum mechanics/molecular mechanics [SORCI+Q//B3LYP/6-31G(d):Amber96] method, and insights into structure, enantioselectivity, and spectroscopy are gathered and presented for the first time. Contrary to general perception, our findings rule out the formation of a hydrogen bond between the hydroxyl-bearing β-ionone ring portion of retinal and opsin. Compared to A(1)-pigments, A(3)- and A(4)-pigments exhibit slightly blue-shifted absorption maxima due to increase in bond-length alternation of the hydroxyretinal. We suggest that (i) the binding site of firefly squid (Watasenia scintillans) opsin is very similar to that of the Japanese common squid (Todarodes pacificus) opsin; (ii) the molecular mechanism of spectral tuning in small white butterflies involve sites S116 and T185 and breaking of a hydrogen bond between sites E180 and T185; and finally (iii) A(3)-retinal may have occurred during the conversion of A(1)- to A(2)-retinal and insects may have acquired them, in order to absorb light in the blue-green wavelength region and to speed up the G-protein signaling cascade.

摘要

自 1983 年 Vogt 在昆虫中发现 A(3)-视黄醛或 3-羟基视黄醛以及 1988 年 Matsui 在萤火虫鱿鱼中发现 A(4)-视黄醛或 4-羟基视黄醛以来,介导视觉的羟基视黄醛-蛋白相互作用在很大程度上仍未得到探索。在本研究中,通过使用混合量子力学/分子力学 [SORCI+Q//B3LYP/6-31G(d):Amber96] 方法,理论上将 A(3)-和 A(4)-视黄醛纳入鱿鱼和牛视觉色素中,并首次收集和呈现了结构、对映选择性和光谱学的见解。与普遍看法相反,我们的发现排除了视黄醛的带羟基β-紫罗兰酮环部分与视蛋白之间形成氢键的可能性。与 A(1)-色素相比,A(3)-和 A(4)-色素由于羟基视黄醛的键长交替增加而表现出略微蓝移的吸收最大值。我们提出:(i)萤火虫鱿鱼(Watasenia scintillans)视蛋白的结合位点与日本普通鱿鱼(Todarodes pacificus)视蛋白非常相似;(ii)小白色蝴蝶光谱调谐的分子机制涉及 S116 和 T185 位点以及 E180 和 T185 位点之间氢键的断裂;最后(iii)A(3)-视黄醛可能在 A(1)-到 A(2)-视黄醛的转化过程中发生,昆虫可能已经获得了它们,以便吸收蓝绿光波长的光并加快 G 蛋白信号级联反应。

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QM/MM study of the structure, energy storage, and origin of the bathochromic shift in vertebrate and invertebrate bathorhodopsins.脊椎动物和无脊椎动物视紫红质结构、能量存储和红移起源的QM/MM 研究。
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