黄单胞菌属 elodea ATCC 31461 基因组序列，该菌是生产胶凝多糖的高效工业菌株。
Genome sequence of Sphingomonas elodea ATCC 31461, a highly productive industrial strain of gellan gum.
机构信息
State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, People’s Republic of China.
出版信息
J Bacteriol. 2011 Dec;193(24):7015-6. doi: 10.1128/JB.06307-11.
Abstract
The commercial gelling agent gellan gum is a heteropolysaccharide produced by Sphingomonas elodea ATCC 31461. However, the genes involved in the biosynthesis, regulation, and modification of gellan gum have not been fully characterized. Here we describe the draft genome sequence of stain ATCC 31461 and major findings from its annotation.
摘要
商业用胶凝剂结冷胶是由鞘氨醇单胞菌（Sphingomonas elodea）ATCC 31461 产生的一种杂多糖。然而，参与结冷胶生物合成、调控和修饰的基因尚未得到充分的描述。本文介绍了菌株 ATCC 31461 的基因组序列草图及其注释的主要发现。
相似文献
1
Genome sequence of Sphingomonas elodea ATCC 31461, a highly productive industrial strain of gellan gum.黄单胞菌属 elodea ATCC 31461 基因组序列，该菌是生产胶凝多糖的高效工业菌株。
J Bacteriol. 2011 Dec;193(24):7015-6. doi: 10.1128/JB.06307-11.
2
Cloning and knockout of phytoene desaturase gene in Sphingomonas elodea ATCC 31461 for economic recovery of gellan gum.在鞘氨醇单胞菌 ATCC 31461 中克隆和敲除八氢番茄红素脱饱和酶基因以经济回收凝胶多糖。
J Ind Microbiol Biotechnol. 2011 Sep;38(9):1507-13. doi: 10.1007/s10295-010-0937-9. Epub 2011 Jan 13.
3
Gellan gum biosynthesis in Sphingomonas paucimobilis ATCC 31461: genes, enzymes and exopolysaccharide production engineering.少动鞘氨醇单胞菌ATCC 31461中结冷胶的生物合成：基因、酶与胞外多糖生产工程
J Ind Microbiol Biotechnol. 2002 Oct;29(4):170-6. doi: 10.1038/sj.jim.7000266.
4
Occurrence, production, and applications of gellan: current state and perspectives.结冷胶的产生、生产及应用：现状与展望
Appl Microbiol Biotechnol. 2008 Jul;79(6):889-900. doi: 10.1007/s00253-008-1496-0. Epub 2008 May 28.
5
Proteins encoded by Sphingomonas elodea ATCC 31461 rmlA and ugpG genes, involved in gellan gum biosynthesis, exhibit both dTDP- and UDP-glucose pyrophosphorylase activities.鞘氨醇单胞菌ATCC 31461的rmlA和ugpG基因编码的蛋白质参与结冷胶生物合成，同时具有dTDP-葡萄糖焦磷酸化酶和UDP-葡萄糖焦磷酸化酶活性。
Appl Environ Microbiol. 2005 Aug;71(8):4703-12. doi: 10.1128/AEM.71.8.4703-4712.2005.
6
Organization of genes required for gellan polysaccharide biosynthesis in Sphingomonas elodea ATCC 31461.鞘氨醇单胞菌ATCC 31461中结冷胶多糖生物合成所需基因的组织
J Ind Microbiol Biotechnol. 2004 Feb;31(2):70-82. doi: 10.1007/s10295-004-0118-9. Epub 2004 Feb 6.
7
A Carotenoid- and Poly-β-Hydroxybutyrate-Free Mutant Strain of ATCC 31461 for the Commercial Production of Gellan.用于商业化生产结冷胶的无类胡萝卜素和聚β-羟基丁酸的 ATCC 31461 突变株。
mSphere. 2019 Oct 16;4(5):e00668-19. doi: 10.1128/mSphere.00668-19.
8
Deproteinization of gellan gum produced by Sphingomonas paucimobilis ATCC 31461.少动鞘氨醇单胞菌ATCC 31461产生的结冷胶的脱蛋白作用
J Biotechnol. 2007 Feb 1;128(2):403-7. doi: 10.1016/j.jbiotec.2006.09.019. Epub 2006 Oct 27.
9
Genome sequence of the welan gum-producing strain Sphingomonas sp. ATCC 31555.韦兰胶产生菌鞘氨醇单胞菌 ATCC 31555 的基因组序列。
J Bacteriol. 2012 Nov;194(21):5989-90. doi: 10.1128/JB.01486-12.
10
A comparison of genes involved in sphingan biosynthesis brought up to date.参与斯皮根聚糖生物合成的基因的最新比较。
Appl Microbiol Biotechnol. 2014 Sep;98(18):7719-33. doi: 10.1007/s00253-014-5940-z. Epub 2014 Aug 1.
引用本文的文献
1
Rapid Screening of High-Yield Gellan Gum Mutants of ATCC 31461 by Combining Atmospheric and Room Temperature Plasma Mutation with Near-Infrared Spectroscopy Monitoring.结合常压室温等离子体诱变与近红外光谱监测快速筛选ATCC 31461高产结冷胶突变体
Foods. 2022 Dec 16;11(24):4078. doi: 10.3390/foods11244078.
2
Diversity and antibacterial activity of endophytic bacteria associated with medicinal plant, .与药用植物相关的内生细菌的多样性及抗菌活性
Vet Res Forum. 2022 Sep;13(3):409-415. doi: 10.30466/vrf.2021.529714.3174. Epub 2022 Sep 15.
3
Characterization of the Aerobic Anoxygenic Phototrophic Bacterium sp. AAP5.好氧不产氧光合细菌AAP5的特性研究
Microorganisms. 2021 Apr 6;9(4):768. doi: 10.3390/microorganisms9040768.
4
Construction of a Robust sp. Strain for Welan Gum Production via the Expression of Global Transcriptional Regulator IrrE.通过表达全局转录调节因子IrrE构建用于生产韦兰胶的鲁棒性[具体菌种名称]菌株
Front Bioeng Biotechnol. 2020 Jun 30;8:674. doi: 10.3389/fbioe.2020.00674. eCollection 2020.
5
Phenotypic and proteomic analysis of positively regulated gellan biosynthesis pathway in .对[具体生物名称]中正向调控的结冷胶生物合成途径的表型和蛋白质组学分析。 （原文中“.”处信息缺失，需补充完整生物名称才能使译文更准确）
Anim Cells Syst (Seoul). 2017 Feb 17;21(2):115-123. doi: 10.1080/19768354.2017.1290678. eCollection 2017.
6
Complete genome sequencing and analysis of endophytic sp. LK11 and its potential in plant growth.内生菌sp. LK11的全基因组测序与分析及其在植物生长中的潜力。
3 Biotech. 2018 Sep;8(9):389. doi: 10.1007/s13205-018-1403-z. Epub 2018 Aug 28.
7
The evolutionary life cycle of the polysaccharide biosynthetic gene cluster based on the Sphingomonadaceae.基于鞘氨醇单胞菌科的多糖生物合成基因簇的进化生命周期。
Sci Rep. 2017 Apr 21;7:46484. doi: 10.1038/srep46484.
8
Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.比较 26 个鞘氨醇单胞菌基因组揭示了多样化的环境适应和生物降解能力。
Appl Environ Microbiol. 2013 Jun;79(12):3724-33. doi: 10.1128/AEM.00518-13. Epub 2013 Apr 5.
9
Genome Sequence of Sphingomonas xenophaga QYY, an Anthraquinone-Degrading Strain.蒽醌降解菌株食异源鞘氨醇单胞菌QYY的基因组序列
Genome Announc. 2013 Jan;1(1). doi: 10.1128/genomeA.00031-12. Epub 2013 Jan 15.
10
Genome sequence of the welan gum-producing strain Sphingomonas sp. ATCC 31555.韦兰胶产生菌鞘氨醇单胞菌 ATCC 31555 的基因组序列。
J Bacteriol. 2012 Nov;194(21):5989-90. doi: 10.1128/JB.01486-12.
本文引用的文献
1
Genome sequence of Sphingobium yanoikuyae XLDN2-5, an efficient carbazole-degrading strain.鞘氨醇单胞菌 XLDN2-5 的全基因组序列，这是一株高效降解咔唑的菌株。
J Bacteriol. 2011 Nov;193(22):6404-5. doi: 10.1128/JB.06050-11.
2
NCBI Reference Sequences: current status, policy and new initiatives.NCBI参考序列：当前状态、政策及新举措。
Nucleic Acids Res. 2009 Jan;37(Database issue):D32-6. doi: 10.1093/nar/gkn721. Epub 2008 Oct 16.
3
Occurrence, production, and applications of gellan: current state and perspectives.结冷胶的产生、生产及应用：现状与展望
Appl Microbiol Biotechnol. 2008 Jul;79(6):889-900. doi: 10.1007/s00253-008-1496-0. Epub 2008 May 28.
4
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
5
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
6
Modeling for gellan gum production by Sphingomonas paucimobilis ATCC 31461 in a simplified medium.少动鞘氨醇单胞菌ATCC 31461在简化培养基中生产结冷胶的建模
Appl Environ Microbiol. 2006 May;72(5):3367-74. doi: 10.1128/AEM.72.5.3367-3374.2006.
7
Organization of genes required for gellan polysaccharide biosynthesis in Sphingomonas elodea ATCC 31461.鞘氨醇单胞菌ATCC 31461中结冷胶多糖生物合成所需基因的组织
J Ind Microbiol Biotechnol. 2004 Feb;31(2):70-82. doi: 10.1007/s10295-004-0118-9. Epub 2004 Feb 6.
8
Characterization of the ugpG gene encoding a UDP-glucose pyrophosphorylase from the gellan gum producer Sphingomonas paucimobilis ATCC 31461.对来自结冷胶生产菌少动鞘氨醇单胞菌ATCC 31461的编码UDP-葡萄糖焦磷酸化酶的ugpG基因的表征。
Mol Genet Genomics. 2003 Mar;268(6):816-24. doi: 10.1007/s00438-003-0805-7. Epub 2003 Feb 26.
9
Gellan gum biosynthesis in Sphingomonas paucimobilis ATCC 31461: genes, enzymes and exopolysaccharide production engineering.少动鞘氨醇单胞菌ATCC 31461中结冷胶的生物合成：基因、酶与胞外多糖生产工程
J Ind Microbiol Biotechnol. 2002 Oct;29(4):170-6. doi: 10.1038/sj.jim.7000266.
10
Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses.基于系统发育和化学分类分析提出狭义鞘氨醇单胞菌属及三个新属，即鞘氨醇杆菌属、新鞘氨醇单胞菌属和鞘氨醇盒菌属。
Int J Syst Evol Microbiol. 2001 Jul;51(Pt 4):1405-17. doi: 10.1099/00207713-51-4-1405.
Zotero 插件