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韩国摇蚊科(昆虫纲:双翅目)的 DNA 条码文库及条码间隙定义索引

A DNA barcode library for Korean Chironomidae (Insecta: Diptera) and indexes for defining barcode gap.

机构信息

Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul 151-747, Korea.

出版信息

Mol Cells. 2012 Jan;33(1):9-17. doi: 10.1007/s10059-012-2151-2. Epub 2011 Dec 1.

Abstract

Non-biting midges (Diptera: Chironomidae) are a diverse population that commonly causes respiratory allergies in humans. Chironomid larvae can be used to indicate freshwater pollution, but accurate identification on the basis of morphological characteristics is difficult. In this study, we constructed a mitochondrial cytochrome c oxidase subunit I (COI)-based DNA barcode library for Korean chironomids. This library consists of 211 specimens from 49 species, including adults and unidentified larvae. The interspecies and intraspecies COI sequence variations were analyzed. Sophisticated indexes were developed in order to properly evaluate indistinct barcode gaps that are created by insufficient sampling on both the interspecies and intraspecies levels and by variable mutation rates across taxa. In a variety of insect datasets, these indexes were useful for re-evaluating large barcode datasets and for defining COI barcode gaps. The COI-based DNA barcode library will provide a rapid and reliable tool for the molecular identification of Korean chironomid species. Furthermore, this reverse-taxonomic approach will be improved by the continuous addition of other speceis' sequences to the library.

摘要

无刺摇蚊(双翅目:摇蚊科)是一类多样性种群,它们通常会引起人类的呼吸道过敏。摇蚊幼虫可用于指示淡水污染,但基于形态特征的准确鉴定较为困难。本研究构建了韩国摇蚊的基于线粒体细胞色素 c 氧化酶亚基 I(COI)的 DNA 条码文库。该文库包含 49 个物种的 211 个标本,包括成虫和未鉴定的幼虫。分析了种间和种内 COI 序列变异。为了正确评估因种间和种内采样不足以及跨分类群的变异率不同而产生的不明显条码间隙,开发了复杂的指标。在各种昆虫数据集上,这些指标可用于重新评估大型条码数据集,并定义 COI 条码间隙。基于 COI 的 DNA 条码文库将为韩国摇蚊种的分子鉴定提供快速可靠的工具。此外,通过不断向文库中添加其他物种的序列,这种反向分类学方法将得到改进。

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