Suppr超能文献

随时间变化的转录本谱,编码白腐菌糙皮侧耳生长在多种木质基质上的木质纤维素修饰酶。

Time-dependent profiles of transcripts encoding lignocellulose-modifying enzymes of the white rot fungus Phanerochaete carnosa grown on multiple wood substrates.

机构信息

Department of Chemical Engineering & Applied Chemistry, University of Toronto, Toronto, Ontario, Canada.

出版信息

Appl Environ Microbiol. 2012 Mar;78(5):1596-600. doi: 10.1128/AEM.06511-11. Epub 2011 Dec 30.

Abstract

The abundances of nine transcripts predicted to encode lignocellulose-modifying enzymes were measured over the course of Phanerochaete carnosa cultivation on four wood species. Profiles were consistent with sequential decay; transcripts encoding lignin-degrading peroxidases featured a significant substrate-dependent response. The chitin synthase gene was identified as the optimal internal reference gene for transcript quantification.

摘要

测定了 9 种预测编码木质纤维素修饰酶的转录本在 Phanerochaete carnosa 生长于四种木材上的过程中的丰度。谱型与顺序降解一致;编码木质素降解过氧化物酶的转录本表现出显著的底物依赖性反应。几丁质合酶基因被确定为转录本定量的最佳内参基因。

相似文献

2
Transcriptomic responses of the softwood-degrading white-rot fungus Phanerochaete carnosa during growth on coniferous and deciduous wood.
Appl Environ Microbiol. 2011 May;77(10):3211-8. doi: 10.1128/AEM.02490-10. Epub 2011 Mar 25.
4
Dynamics of the Phanerochaete carnosa transcriptome during growth on aspen and spruce.
BMC Genomics. 2018 Nov 13;19(1):815. doi: 10.1186/s12864-018-5210-z.
5
Mode of coniferous wood decay by the white rot fungus Phanerochaete carnosa as elucidated by FTIR and ToF-SIMS.
Appl Microbiol Biotechnol. 2012 Jun;94(5):1303-11. doi: 10.1007/s00253-011-3830-1.
6
Expression and regulation of genes encoding lignocellulose-degrading activity in the genus Phanerochaete.
Appl Microbiol Biotechnol. 2012 Apr;94(2):339-51. doi: 10.1007/s00253-012-3937-z. Epub 2012 Mar 6.
7
Influence of Populus genotype on gene expression by the wood decay fungus Phanerochaete chrysosporium.
Appl Environ Microbiol. 2014 Sep;80(18):5828-35. doi: 10.1128/AEM.01604-14. Epub 2014 Jul 11.
8
Proteomic characterization of lignocellulose-degrading enzymes secreted by Phanerochaete carnosa grown on spruce and microcrystalline cellulose.
Appl Microbiol Biotechnol. 2010 May;86(6):1903-14. doi: 10.1007/s00253-010-2516-4. Epub 2010 Mar 20.
9
Regulation of Gene Expression during the Onset of Ligninolytic Oxidation by Phanerochaete chrysosporium on Spruce Wood.
Appl Environ Microbiol. 2015 Nov;81(22):7802-12. doi: 10.1128/AEM.02064-15. Epub 2015 Sep 4.
10
The first genome-level transcriptome of the wood-degrading fungus Phanerochaete chrysosporium grown on red oak.
Curr Genet. 2009 Jun;55(3):273-86. doi: 10.1007/s00294-009-0243-0. Epub 2009 Apr 26.

引用本文的文献

4
Wood-water relationships and their role for wood susceptibility to fungal decay.
Appl Microbiol Biotechnol. 2020 May;104(9):3781-3795. doi: 10.1007/s00253-020-10479-1. Epub 2020 Mar 6.
5
Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi.
ISME J. 2019 Jun;13(6):1391-1403. doi: 10.1038/s41396-019-0359-2. Epub 2019 Feb 4.
6
Dynamics of the Phanerochaete carnosa transcriptome during growth on aspen and spruce.
BMC Genomics. 2018 Nov 13;19(1):815. doi: 10.1186/s12864-018-5210-z.
7
Oxidoreductases and Reactive Oxygen Species in Conversion of Lignocellulosic Biomass.
Microbiol Mol Biol Rev. 2018 Sep 26;82(4). doi: 10.1128/MMBR.00029-18. Print 2018 Dec.
8
Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola.
Appl Environ Microbiol. 2018 Aug 1;84(16). doi: 10.1128/AEM.00991-18. Print 2018 Aug 15.
9
Deciphering lignocellulose deconstruction by the white rot fungus based on genomic and transcriptomic analyses.
Biotechnol Biofuels. 2018 Mar 2;11:58. doi: 10.1186/s13068-018-1060-9. eCollection 2018.
10
The integrative omics of white-rot fungus Pycnoporus coccineus reveals co-regulated CAZymes for orchestrated lignocellulose breakdown.
PLoS One. 2017 Apr 10;12(4):e0175528. doi: 10.1371/journal.pone.0175528. eCollection 2017.

本文引用的文献

1
Mode of coniferous wood decay by the white rot fungus Phanerochaete carnosa as elucidated by FTIR and ToF-SIMS.
Appl Microbiol Biotechnol. 2012 Jun;94(5):1303-11. doi: 10.1007/s00253-011-3830-1.
2
Transcriptomic responses of the softwood-degrading white-rot fungus Phanerochaete carnosa during growth on coniferous and deciduous wood.
Appl Environ Microbiol. 2011 May;77(10):3211-8. doi: 10.1128/AEM.02490-10. Epub 2011 Mar 25.
3
Cellotriose and cellotetraose as inducers of the genes encoding cellobiohydrolases in the basidiomycete Phanerochaete chrysosporium.
Appl Environ Microbiol. 2010 Sep;76(18):6164-70. doi: 10.1128/AEM.00724-10. Epub 2010 Jul 23.
4
Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium.
Appl Environ Microbiol. 2010 Jun;76(11):3599-610. doi: 10.1128/AEM.00058-10. Epub 2010 Apr 16.
6
The first genome-level transcriptome of the wood-degrading fungus Phanerochaete chrysosporium grown on red oak.
Curr Genet. 2009 Jun;55(3):273-86. doi: 10.1007/s00294-009-0243-0. Epub 2009 Apr 26.
7
Transcriptome and secretome analyses of Phanerochaete chrysosporium reveal complex patterns of gene expression.
Appl Environ Microbiol. 2009 Jun;75(12):4058-68. doi: 10.1128/AEM.00314-09. Epub 2009 Apr 17.
8
Differential expression in Phanerochaete chrysosporium of membrane-associated proteins relevant to lignin degradation.
Appl Environ Microbiol. 2008 Dec;74(23):7252-7. doi: 10.1128/AEM.01997-08. Epub 2008 Oct 10.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验