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担子菌裂褶菌交配的转录组与功能分析。

Transcriptome and functional analysis of mating in the basidiomycete Schizophyllum commune.

作者信息

Erdmann Susann, Freihorst Daniela, Raudaskoski Marjatta, Schmidt-Heck Wolfgang, Jung Elke-Martina, Senftleben Dominik, Kothe Erika

机构信息

Institute of Microbiology-Microbial Phytopathology, Friedrich-Schiller University, Jena, Germany.

出版信息

Eukaryot Cell. 2012 May;11(5):571-89. doi: 10.1128/EC.05214-11. Epub 2011 Dec 30.

Abstract

In this study, we undertook a functional characterization and transcriptome analysis that enabled a comprehensive study of the mating type loci of the mushroom Schizophyllum commune. Induced expression of both the bar2 receptor and the bap2(2) pheromone gene within 6 to 12 h after mates' contact was demonstrated by quantitative real-time PCR. Similar temporal expression patterns were confirmed for the allelic bbr1 receptor and bbp1 pheromone-encoding genes by Northern hybridization. Interestingly, the fusion of clamp connections to the subterminal cell was delayed in mating interactions in which one of the compatible partners expressed the bar2 receptor with a truncated C terminus. This developmental delay allowed the visualization of a green fluorescent protein (Gfp)-labeled truncated receptor at the cell periphery, consistent with a localization in the plasma membrane of unfused pseudoclamps. This finding does not support hypotheses envisioning a receptor localization to the nuclear membrane facilitating recognition between the two different nuclei present in each dikaryotic cell. Rather, Gfp fluorescence observed in such pseudoclamps indicated a role of receptor-pheromone interaction in clamp fusion. Transcriptome changes associated with mating interactions were analyzed in order to identify a role for pheromone-receptor interactions. We detected a total of 89 genes that were transcriptionally regulated in a mating type locus A-dependent manner, employing a cutoff of 5-fold changes in transcript abundance. Upregulation in cell cycle-related genes and downregulation of genes involved in metabolism were seen with this set of experiments. In contrast, mating type locus B-dependent transcriptome changes were observed in 208 genes, with a specific impact on genes related to cell wall and membrane metabolism, stress response, and the redox status of the cell.

摘要

在本研究中,我们进行了功能表征和转录组分析,从而能够全面研究裂褶菌交配型基因座。通过定量实时PCR证明,交配接触后6至12小时内,bar2受体和bap2(2)信息素基因均有诱导表达。通过Northern杂交证实了等位基因bbr1受体和bbp1信息素编码基因具有相似的时间表达模式。有趣的是,在交配互作中,当一个亲和伴侣表达C末端截短的bar2受体时,锁状联合与亚末端细胞的融合会延迟。这种发育延迟使得能够在细胞周边观察到绿色荧光蛋白(Gfp)标记的截短受体,这与未融合假锁状联合在质膜中的定位一致。这一发现不支持受体定位于核膜以促进每个双核细胞中存在的两个不同细胞核之间识别的假说。相反,在这种假锁状联合中观察到的Gfp荧光表明受体 - 信息素相互作用在锁状联合融合中起作用。为了确定信息素 - 受体相互作用的作用,分析了与交配互作相关的转录组变化。我们总共检测到89个基因,其转录受交配型基因座A依赖性调控,转录丰度变化的截止值为5倍。在这组实验中,观察到细胞周期相关基因上调,代谢相关基因下调。相比之下,在208个基因中观察到交配型基因座B依赖性转录组变化,对与细胞壁和膜代谢、应激反应以及细胞氧化还原状态相关的基因有特定影响。

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