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整合素结合肽(RGD)与金红石表面相互作用的建模:阳离子中介对 Asp 吸附的影响。

Modeling the interaction between integrin-binding peptide (RGD) and rutile surface: the effect of cation mediation on Asp adsorption.

机构信息

Center for Precision Engineering, Harbin Institute of Technology, P.O. Box 413, Harbin 150001, China.

出版信息

Langmuir. 2012 Feb 7;28(5):2799-811. doi: 10.1021/la204329d. Epub 2012 Jan 25.

Abstract

The binding of a negatively charged residue, aspartic acid (Asp) in tripeptide arginine-glycine-aspartic acid, onto a negatively charged hydroxylated rutile (110) surface in aqueous solution, containing divalent (Mg(2+), Ca(2+), or Sr(2+)) or monovalent (Na(+), K(+), or Rb(+)) cations, was studied by molecular dynamics (MD) simulations. The results indicate that ionic radii and charges will significantly affect the hydration, adsorption geometry, and distance of cations from the rutile surface, thereby regulating the Asp/rutile binding mode. The adsorption strength of monovalent cations on the rutile surface in the order Na(+) > K(+) > Rb(+) shows a "reverse" lyotropic trend, while the divalent cations on the same surface exhibit a "regular" lyotropic behavior with decreasing crystallographic radii (the adsorption strength of divalent cations: Sr(2+) > Ca(2+) > Mg(2+)). The Asp side chain in NaCl, KCl, and RbCl solutions remains stably H-bonded to the surface hydroxyls and the inner-sphere adsorbed compensating monovalent cations act as a bridge between the COO(-) group and the rutile, helping to "trap" the negatively charged Asp side chain on the negatively charged surface. In contrast, the mediating divalent cations actively participate in linking the COO(-) group to the rutile surface; thus the Asp side chain can remain stably on the rutile (110) surface, even if it is not involved in any hydrogen bonds with the surface hydroxyls. Inner- and outer-sphere geometries are all possible mediation modes for divalent cations in bridging the peptide to the rutile surface.

摘要

在含有二价(Mg(2+)、Ca(2+)或 Sr(2+))或一价(Na(+)、K(+)或 Rb(+))阳离子的水溶液中,研究了带负电荷的残基天冬氨酸(Asp)在三肽精氨酸-甘氨酸-天冬氨酸与带负电荷的水合锐钛矿(110)表面之间的结合。通过分子动力学(MD)模拟。结果表明,离子半径和电荷会显著影响阳离子在水合锐钛矿表面的水合、吸附几何形状和距离,从而调节 Asp/锐钛矿的结合模式。一价阳离子在锐钛矿表面的吸附强度按 Na(+)>K(+)>Rb(+)的顺序呈现出“反向”溶致趋势,而相同表面上的二价阳离子则表现出“规则”溶致行为,随着晶面半径的减小(二价阳离子的吸附强度:Sr(2+)>Ca(2+)>Mg(2+))。在 NaCl、KCl 和 RbCl 溶液中,Asp 侧链仍然稳定地与表面羟基形成 H 键,内球吸附的补偿一价阳离子充当 COO(-)基团与锐钛矿之间的桥梁,有助于“捕获”带负电荷的 Asp 侧链在带负电荷的表面上。相比之下,中介二价阳离子积极参与将 COO(-)基团连接到锐钛矿表面;因此,Asp 侧链可以稳定地留在锐钛矿(110)表面上,即使它不与表面羟基形成任何氢键。内球和外球几何形状都是二价阳离子在将肽桥接到锐钛矿表面时的可能介导模式。

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