Beijing Institute of Microbiology and Epidemiology, Beijing, People's Republic of China
Appl Environ Microbiol. 2012 Mar;78(5):1480-90. doi: 10.1128/AEM.07016-11. Epub 2012 Jan 6.
There is great interest in the membrane lipids of archaea (glycerol dialkyl glycerol tetraethers [GDGTs]) as tracers of archaeal biomass because of their utility as paleoproxies and because of the biogeochemical importance of archaea. While core GDGTs (formed by hydrolysis of polar head groups of intact GDGTs after cell death) are appropriate for paleostudies, they have also been used to trace archaeal populations. Also, despite the small size (0.2 by 0.7 μm) of cultivated marine archaea, 0.7-μm glass-fiber filters (GFFs) are typically used to collect GDGTs from natural waters. We quantified both core and intact GDGTs in free-living (0.2- to 0.7-μm), suspended (0.7- to 60-μm), and aggregate (>60-μm) particle size fractions in Puget Sound (Washington State). On average, the free-living fraction contained 36% of total GDGTs, 90% of which were intact. The intermediate-size fraction contained 62% of GDGTs, and 29% of these were intact. The aggregate fraction contained 2% of the total GDGT pool, and 29% of these were intact. Our results demonstrate that intact GDGTs are largely in the free-living fraction. Because only intact GDGTs are present in living cells, protocols that target this size fraction and analyze the intact GDGT pool are necessary to track living populations in marine waters. Core GDGT enrichment in larger-size fractions indicates that archaeal biomass may quickly become attached or entrained in particles once the archaea are dead or dying. While the concentrations of the two pools were generally not correlated, the similar sizes of the core and intact GDGT pools suggest that core GDGTs are removed from the water column on timescales similar to those of cell replication, on timescales of days to weeks.
人们对古菌(甘油二烷基甘油四醚 [GDGTs])的膜脂非常感兴趣,因为它们作为古菌生物量的示踪剂具有实用价值,而且古菌在生物地球化学方面也很重要。虽然核心 GDGTs(在细胞死亡后通过水解完整 GDGTs 的极性头基团形成)适合古生物学研究,但它们也被用于追踪古菌种群。此外,尽管培养的海洋古菌体积很小(0.2 乘 0.7 微米),但通常使用 0.7 微米的玻璃纤维过滤器(GFF)从天然水中收集 GDGTs。我们在普吉特海湾(华盛顿州)的自由生活(0.2 至 0.7 微米)、悬浮(0.7 至 60 微米)和聚集体(大于 60 微米)颗粒尺寸级分中定量了核心和完整的 GDGTs。平均而言,自由生活级分含有 36%的总 GDGTs,其中 90%为完整的。中间大小级分含有 62%的 GDGTs,其中 29%为完整的。聚集体级分含有总 GDGT 池的 2%,其中 29%为完整的。我们的结果表明,完整的 GDGTs 主要存在于自由生活级分中。由于只有完整的 GDGTs 存在于活细胞中,因此需要针对这个尺寸级分并分析完整的 GDGT 池的方案,以追踪海洋水中的活种群。核心 GDGT 在较大尺寸级分中的富集表明,一旦古菌死亡或垂死,古菌生物量可能很快附着或卷入颗粒中。虽然两个池的浓度通常不相关,但核心和完整 GDGT 池的相似大小表明,核心 GDGTs 在类似于细胞复制的时间尺度上从水柱中去除,在几天到几周的时间尺度上。