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本文引用的文献

1
Determination of the sedimentary microbial biomass by extractible lipid phosphate.通过可提取脂质磷酸盐测定沉积微生物生物量。
Oecologia. 1979 Jan;40(1):51-62. doi: 10.1007/BF00388810.
2
Core and intact polar glycerol dibiphytanyl glycerol tetraether lipids of ammonia-oxidizing archaea enriched from marine and estuarine sediments.从海洋和河口沉积物中富集的氨氧化古菌的核心和完整极性甘油二植烷甘油四醚脂质。
Appl Environ Microbiol. 2011 May;77(10):3468-77. doi: 10.1128/AEM.02758-10. Epub 2011 Mar 25.
3
Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current.加利福尼亚中部海流中硝化古菌和细菌的活性、丰度和多样性。
Environ Microbiol. 2010 Jul;12(7):1989-2006. doi: 10.1111/j.1462-2920.2010.02205.x. Epub 2010 Mar 23.
4
High abundance of ammonia-oxidizing Archaea in coastal waters, determined using a modified DNA extraction method.采用改良的 DNA 提取方法,在沿海海域检测到高丰度的氨氧化古菌。
Appl Environ Microbiol. 2010 Apr;76(7):2129-35. doi: 10.1128/AEM.02692-09. Epub 2010 Jan 29.
5
Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean.太平洋中泉古菌 amoA 基因和转录本的丰度。
Environ Microbiol. 2010 Mar;12(3):679-88. doi: 10.1111/j.1462-2920.2009.02108.x. Epub 2009 Nov 25.
6
Diversity of total and active free-living vs. particle-attached bacteria in the euphotic zone of the NW Mediterranean Sea.西北地中海透光层中总自由生活菌和活跃自由生活菌与颗粒附着菌的多样性。
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7
In situ production of crenarchaeol in two california hot springs.加利福尼亚州两个温泉中泉古菌醇的原位生成
Appl Environ Microbiol. 2009 Jul;75(13):4443-51. doi: 10.1128/AEM.02591-08. Epub 2009 May 1.
8
Significant contribution of Archaea to extant biomass in marine subsurface sediments.古菌对海洋次表层沉积物中现存生物量的重大贡献。
Nature. 2008 Aug 21;454(7207):991-4. doi: 10.1038/nature07174. Epub 2008 Jul 20.
9
Intact membrane lipids of "Candidatus Nitrosopumilus maritimus," a cultivated representative of the cosmopolitan mesophilic group I Crenarchaeota.“暂定嗜盐硝化侏儒菌”(Candidatus Nitrosopumilus maritimus)的完整膜脂,这是广泛分布的嗜温泉古菌组I的一种培养代表菌株。
Appl Environ Microbiol. 2008 Apr;74(8):2433-40. doi: 10.1128/AEM.01709-07. Epub 2008 Feb 22.
10
Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota.嗜温泉古菌:关于第三个古菌门——奇古菌门的提议。
Nat Rev Microbiol. 2008 Mar;6(3):245-52. doi: 10.1038/nrmicro1852.

古菌甘油二烷基甘油四醚的完整膜脂和核心膜脂在普吉特湾胡德运河大小分级颗粒有机物中的分布。

Distribution of intact and core membrane lipids of archaeal glycerol dialkyl glycerol tetraethers among size-fractionated particulate organic matter in hood canal, puget sound.

机构信息

Beijing Institute of Microbiology and Epidemiology, Beijing, People's Republic of China

出版信息

Appl Environ Microbiol. 2012 Mar;78(5):1480-90. doi: 10.1128/AEM.07016-11. Epub 2012 Jan 6.

DOI:10.1128/AEM.07016-11
PMID:22226949
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3294470/
Abstract

There is great interest in the membrane lipids of archaea (glycerol dialkyl glycerol tetraethers [GDGTs]) as tracers of archaeal biomass because of their utility as paleoproxies and because of the biogeochemical importance of archaea. While core GDGTs (formed by hydrolysis of polar head groups of intact GDGTs after cell death) are appropriate for paleostudies, they have also been used to trace archaeal populations. Also, despite the small size (0.2 by 0.7 μm) of cultivated marine archaea, 0.7-μm glass-fiber filters (GFFs) are typically used to collect GDGTs from natural waters. We quantified both core and intact GDGTs in free-living (0.2- to 0.7-μm), suspended (0.7- to 60-μm), and aggregate (>60-μm) particle size fractions in Puget Sound (Washington State). On average, the free-living fraction contained 36% of total GDGTs, 90% of which were intact. The intermediate-size fraction contained 62% of GDGTs, and 29% of these were intact. The aggregate fraction contained 2% of the total GDGT pool, and 29% of these were intact. Our results demonstrate that intact GDGTs are largely in the free-living fraction. Because only intact GDGTs are present in living cells, protocols that target this size fraction and analyze the intact GDGT pool are necessary to track living populations in marine waters. Core GDGT enrichment in larger-size fractions indicates that archaeal biomass may quickly become attached or entrained in particles once the archaea are dead or dying. While the concentrations of the two pools were generally not correlated, the similar sizes of the core and intact GDGT pools suggest that core GDGTs are removed from the water column on timescales similar to those of cell replication, on timescales of days to weeks.

摘要

人们对古菌(甘油二烷基甘油四醚 [GDGTs])的膜脂非常感兴趣,因为它们作为古菌生物量的示踪剂具有实用价值,而且古菌在生物地球化学方面也很重要。虽然核心 GDGTs(在细胞死亡后通过水解完整 GDGTs 的极性头基团形成)适合古生物学研究,但它们也被用于追踪古菌种群。此外,尽管培养的海洋古菌体积很小(0.2 乘 0.7 微米),但通常使用 0.7 微米的玻璃纤维过滤器(GFF)从天然水中收集 GDGTs。我们在普吉特海湾(华盛顿州)的自由生活(0.2 至 0.7 微米)、悬浮(0.7 至 60 微米)和聚集体(大于 60 微米)颗粒尺寸级分中定量了核心和完整的 GDGTs。平均而言,自由生活级分含有 36%的总 GDGTs,其中 90%为完整的。中间大小级分含有 62%的 GDGTs,其中 29%为完整的。聚集体级分含有总 GDGT 池的 2%,其中 29%为完整的。我们的结果表明,完整的 GDGTs 主要存在于自由生活级分中。由于只有完整的 GDGTs 存在于活细胞中,因此需要针对这个尺寸级分并分析完整的 GDGT 池的方案,以追踪海洋水中的活种群。核心 GDGT 在较大尺寸级分中的富集表明,一旦古菌死亡或垂死,古菌生物量可能很快附着或卷入颗粒中。虽然两个池的浓度通常不相关,但核心和完整 GDGT 池的相似大小表明,核心 GDGTs 在类似于细胞复制的时间尺度上从水柱中去除,在几天到几周的时间尺度上。