太平洋中泉古菌 amoA 基因和转录本的丰度。

Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean.

机构信息

School of Ocean and Earth Science and Technology, Department of Oceanography, University of Hawaii, Honolulu, HI 96822, USA.

出版信息

Environ Microbiol. 2010 Mar;12(3):679-88. doi: 10.1111/j.1462-2920.2009.02108.x. Epub 2009 Nov 25.

Abstract

Planktonic Crenarchaea are thought to play a key role in chemolithotrophic ammonia oxidation, a critical step of the marine nitrogen (N) cycle. In this study, we examined the spatial distributions of ammonia-oxidizing Crenarchaea across a large (approximately 5200 km) region of the central Pacific Ocean. Examination of crenarchaeal 16S rRNA, ammonia monooxygenase subunit A (amoA) genes, and amoA transcript abundances provided insight into their spatial distributions and activities. Crenarchaeal gene abundances increased three to four orders of magnitude with depth between the upper ocean waters and dimly lit waters of the mesopelagic zone. The resulting median value of the crenarchaeal amoA: 16S rRNA gene ratio was 1.3, suggesting the majority of Crenarchaea in the epi- and mesopelagic regions of the Pacific Ocean have the metabolic machinery for ammonia oxidation. Crenarchaeal amoA transcript abundances typically increased one to two orders of magnitude in the transitional zone separating the epipelagic waters from the mesopelagic (100-200 m), before decreasing into the interior of the mesopelagic zone. The resulting gene copy normalized transcript abundances revealed elevated amoA expression in the upper ocean waters (0-100 m) where crenarchaeal abundances were low, with transcripts decreasing into the mesopelagic zone as crenarchaeal gene abundances increased. These results suggest ammonia-oxidizing Crenarchaea are active contributors to the N cycle throughout the epi- and mesopelagic waters of the Pacific Ocean.

摘要

浮游古菌被认为在化能自养氨氧化过程中起着关键作用,这是海洋氮(N)循环的关键步骤。在这项研究中,我们研究了太平洋中部一个大区域(约 5200 公里)氨氧化古菌的空间分布。古菌 16S rRNA、氨单加氧酶亚基 A(amoA)基因和 amoA 转录物丰度的检测提供了对其空间分布和活性的深入了解。古菌基因丰度在上层海水和中层微光区的昏暗海水中随深度增加了三个到四个数量级。古菌 amoA:16S rRNA 基因比值的中位数为 1.3,表明太平洋表水和中层区的大多数古菌都具有氨氧化的代谢机制。古菌 amoA 转录物丰度通常在上层海水与中层(100-200 米)之间的过渡区增加一个到两个数量级,然后在进入中层区内部时减少。经基因拷贝归一化的转录物丰度显示,在古菌丰度较低的上层海水(0-100 米)中氨氧化古菌的表达水平升高,随着古菌基因丰度的增加,转录物在进入中层区时减少。这些结果表明,氨氧化古菌在太平洋的表水和中层水区域的氮循环中是活跃的贡献者。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9942/2847202/0764e5dfe477/emi0012-0679-f1.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索