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血清尿酸浓度的全基因组关联研究:克罗地亚亚得里亚海沿岸岛屿人群中序列变异的重复验证

Genome-wide association of serum uric acid concentration: replication of sequence variants in an island population of the Adriatic coast of Croatia.

作者信息

Karns Rebekah, Zhang Ge, Sun Guangyun, Rao Indugula Subba, Cheng Hong, Havas-Augustin Dubravka, Novokmet Natalija, Rudan Dusko, Durakovic Zijad, Missoni Sasa, Chakraborty Ranajit, Rudan Pavao, Deka Ranjan

机构信息

Center for Genome Information, Department of Environmental Health, University of Cincinnati, and Cincinnati Children's Hospital, Cincinnati, OH 45267, USA.

出版信息

Ann Hum Genet. 2012 Mar;76(2):121-7. doi: 10.1111/j.1469-1809.2011.00698.x. Epub 2012 Jan 9.

Abstract

A genome-wide association study of serum uric acid (SUA) laevels was performed in a relatively isolated population of European descent from an island of the Adriatic coast of Croatia. The study sample included 532 unrelated and 768 related individuals from 235 pedigrees. Inflation due to relatedness was controlled by using genomic control. Genetic association was assessed with 2,241,249 single nucleotide polymorphisms (SNPs) in 1300 samples after adjusting for age and gender. Our study replicated four previously reported SUA loci (SLC2A9, ABCG2, RREB1, and SLC22A12). The strongest association was found with a SNP in SLC2A9 (rs13129697, P=2.33×10(-19)), which exhibited significant gender-specific effects, 35.76 μmol/L (P=2.11×10(-19)) in females and 19.58 μmol/L (P=5.40×10(-5)) in males. Within this region of high linkage disequilibrium, we also detected a strong association with a nonsynonymous SNP, rs16890979 (P=2.24×10(-17)), a putative causal variant for SUA variation. In addition, we identified several novel loci suggestive of association with uric acid levels (SEMA5A, TMEM18, SLC28A2, and ODZ2), although the P-values (P<5×10(-6)) did not reach the threshold of genome-wide significance. Together, these findings provide further confirmation of previously reported uric-acid-related genetic variants and highlight suggestive new loci for additional investigation.

摘要

在克罗地亚亚得里亚海沿岸一个岛屿上相对隔离的欧洲血统人群中,开展了一项关于血清尿酸(SUA)水平的全基因组关联研究。研究样本包括来自235个家系的532名无亲缘关系个体和768名有亲缘关系个体。通过基因组控制来控制因亲缘关系导致的膨胀现象。在对年龄和性别进行校正后,对1300个样本中的2241249个单核苷酸多态性(SNP)进行了遗传关联评估。我们的研究重复了之前报道的4个SUA位点(SLC2A9、ABCG2、RREB1和SLC22A12)。在SLC2A9中发现了与一个SNP的最强关联(rs13129697,P = 2.33×10⁻¹⁹),该关联表现出显著的性别特异性效应,女性为35.76 μmol/L(P = 2.11×10⁻¹⁹),男性为19.58 μmol/L(P = 5.40×10⁻⁵)。在这个高连锁不平衡区域内,我们还检测到与一个非同义SNP rs16890979有强关联(P = 2.24×10⁻¹⁷),它是SUA变异的一个假定因果变异。此外,我们鉴定出了几个提示与尿酸水平相关的新位点(SEMA5A、TMEM18、SLC28A2和ODZ2),尽管P值(P < 5×10⁻⁶)未达到全基因组显著性阈值。总之,这些发现进一步证实了之前报道的与尿酸相关的遗传变异,并突出了有待进一步研究的提示性新位点。

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