Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina, USA.
Appl Environ Microbiol. 2012 Mar;78(6):1978-86. doi: 10.1128/AEM.07069-11. Epub 2012 Jan 13.
Four hyperthermophilic members of the bacterial genus Thermotoga (T. maritima, T. neapolitana, T. petrophila, and Thermotoga sp. strain RQ2) share a core genome of 1,470 open reading frames (ORFs), or about 75% of their genomes. Nonetheless, each species exhibited certain distinguishing features during growth on simple and complex carbohydrates that correlated with genomic inventories of specific ABC sugar transporters and glycoside hydrolases. These differences were consistent with transcriptomic analysis based on a multispecies cDNA microarray. Growth on a mixture of six pentoses and hexoses showed no significant utilization of galactose or mannose by any of the four species. T. maritima and T. neapolitana exhibited similar monosaccharide utilization profiles, with a strong preference for glucose and xylose over fructose and arabinose. Thermotoga sp. strain RQ2 also used glucose and xylose, but was the only species to utilize fructose to any extent, consistent with a phosphotransferase system (PTS) specific for this sugar encoded in its genome. T. petrophila used glucose to a significantly lesser extent than the other species. In fact, the XylR regulon was triggered by growth on glucose for T. petrophila, which was attributed to the absence of a glucose transporter (XylE2F2K2), otherwise present in the other Thermotoga species. This suggested that T. petrophila acquires glucose through the XylE1F1K1 transporter, which primarily serves to transport xylose in the other three Thermotoga species. The results here show that subtle differences exist among the hyperthermophilic Thermotogales with respect to carbohydrate utilization, which supports their designation as separate species.
四种嗜热细菌属 Thermotoga(T. maritima、T. neapolitana、T. petrophila 和 Thermotoga sp. strain RQ2)具有共享的核心基因组 1470 个开放阅读框(ORFs),约占其基因组的 75%。然而,每种物种在简单和复杂碳水化合物上的生长表现出某些特征,这些特征与特定的 ABC 糖转运蛋白和糖苷水解酶的基因组清单相关。这些差异与基于多物种 cDNA 微阵列的转录组分析一致。在六种戊糖和己糖的混合物上生长时,没有任何一种四种种属明显利用半乳糖或甘露糖。T. maritima 和 T. neapolitana 表现出相似的单糖利用谱,强烈偏爱葡萄糖和木糖而不是果糖和阿拉伯糖。Thermotoga sp. strain RQ2 也使用葡萄糖和木糖,但它是唯一在某种程度上利用果糖的物种,这与其基因组中编码的特定果糖磷酸转移酶系统(PTS)一致。T. petrophila 比其他物种更少量地使用葡萄糖。事实上,XylR 调控子在 T. petrophila 生长在葡萄糖上时被触发,这归因于葡萄糖转运蛋白(XylE2F2K2)的缺失,而其他 Thermotoga 物种都存在这种蛋白。这表明 T. petrophila 通过 XylE1F1K1 转运蛋白获取葡萄糖,该转运蛋白主要在其他三种 Thermotoga 物种中用于运输木糖。这些结果表明,嗜热 Thermotogales 之间在碳水化合物利用方面存在细微差异,这支持了它们被指定为不同物种的分类。