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CBM3d, a novel subfamily of family 3 carbohydrate-binding modules identified in Cel48A exoglucanase of Cellulosilyticum ruminicola.CBM3d,在瘤胃产纤维素菌 Cel48A 外切葡聚糖酶中发现的家族 3 碳水化合物结合模块的一个新亚家族。
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Biochemical analyses of multiple endoxylanases from the rumen bacterium Ruminococcus albus 8 and their synergistic activities with accessory hemicellulose-degrading enzymes.从瘤胃细菌白瘤胃球菌 8 中分离的多种内切木聚糖酶的生化分析及其与辅助半纤维素降解酶的协同活性。
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Use of label-free quantitative proteomics to distinguish the secreted cellulolytic systems of Caldicellulosiruptor bescii and Caldicellulosiruptor obsidiansis.利用无标记定量蛋白质组学区分嗜热纤维梭菌和耐热硬木梭菌的分泌纤维酶系统。
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Phylogenetic, microbiological, and glycoside hydrolase diversities within the extremely thermophilic, plant biomass-degrading genus Caldicellulosiruptor.极度嗜热、植物生物质降解属 Caldicellulosiruptor 中的系统发育、微生物学和糖苷水解酶多样性。
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来源于嗜热纤维梭菌的多功能纤维素酶/甘露聚糖酶的生化和突变分析。

Biochemical and mutational analyses of a multidomain cellulase/mannanase from Caldicellulosiruptor bescii.

机构信息

Energy Biosciences Institute, University of Illinois, Urbana, Illinois, USA.

出版信息

Appl Environ Microbiol. 2012 Apr;78(7):2230-40. doi: 10.1128/AEM.06814-11. Epub 2012 Jan 13.

DOI:10.1128/AEM.06814-11
PMID:22247178
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3302618/
Abstract

Thermophilic cellulases and hemicellulases are of significant interest to the biofuel industry due to their perceived advantages over their mesophilic counterparts. We describe here biochemical and mutational analyses of Caldicellulosiruptor bescii Cel9B/Man5A (CbCel9B/Man5A), a highly thermophilic enzyme. As one of the highly secreted proteins of C. bescii, the enzyme is likely to be critical to nutrient acquisition by the bacterium. CbCel9B/Man5A is a modular protein composed of three carbohydrate-binding modules flanked at the N terminus and the C terminus by a glycoside hydrolase family 9 (GH9) module and a GH5 module, respectively. Based on truncational analysis of the polypeptide, the cellulase and mannanase activities within CbCel9B/Man5A were assigned to the N- and C-terminal modules, respectively. CbCel9B/Man5A and its truncational mutants, in general, exhibited a pH optimum of ∼5.5 and a temperature optimum of 85°C. However, at this temperature, thermostability was very low. After 24 h of incubation at 75°C, the wild-type protein maintained 43% activity, whereas a truncated mutant, TM1, maintained 75% activity. The catalytic efficiency with phosphoric acid swollen cellulose as a substrate for the wild-type protein was 7.2 s(-1) ml/mg, and deleting the GH5 module led to a mutant (TM1) with a 2-fold increase in this kinetic parameter. Deletion of the GH9 module also increased the apparent k(cat) of the truncated mutant TM5 on several mannan-based substrates; however, a concomitant increase in the K(m) led to a decrease in the catalytic efficiencies on all substrates. These observations lead us to postulate that the two catalytic activities are coupled in the polypeptide.

摘要

嗜热纤维素酶和半纤维素酶因其相对于中温酶的优势而受到生物燃料行业的极大关注。我们在这里描述了嗜热菌 Caldicellulosiruptor bescii Cel9B/Man5A(CbCel9B/Man5A)的生化和突变分析,该酶是一种高度嗜热的酶。作为 C. bescii 中高度分泌的蛋白质之一,该酶可能对细菌获取营养物质至关重要。CbCel9B/Man5A 是一种由三个糖基结合模块组成的模块化蛋白,其 N 端和 C 端分别被糖苷水解酶家族 9(GH9)模块和 GH5 模块包围。根据多肽的截断分析,CbCel9B/Man5A 的纤维素酶和甘露聚糖酶活性分别分配给 N-和 C-末端模块。一般来说,CbCel9B/Man5A 及其截断突变体的最适 pH 值约为 5.5,最适温度为 85°C。然而,在这个温度下,热稳定性非常低。在 75°C 孵育 24 小时后,野生型蛋白保持 43%的活性,而截断突变体 TM1 保持 75%的活性。野生型蛋白以磷酸化膨胀纤维素为底物的催化效率为 7.2 s(-1) ml/mg,而删除 GH5 模块导致突变体(TM1)的动力学参数增加了 2 倍。GH9 模块的缺失也增加了截断突变体 TM5 在几种基于甘露聚糖的底物上的表观 k(cat);然而,K(m)的同时增加导致所有底物上的催化效率降低。这些观察结果使我们假设两个催化活性在多肽中是耦合的。