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Characterization of Paenibacillus curdlanolyticus B-6 Xyn10D, a xylanase that contains a family 3 carbohydrate-binding module.解析:Paenibacillus curdlanolyticus B-6 Xyn10D 是一种木聚糖酶,它含有一个家族 3 碳水化合物结合模块。
Appl Environ Microbiol. 2011 Jun;77(12):4260-3. doi: 10.1128/AEM.00226-11. Epub 2011 Apr 15.
2
Analysis of a Clostridium josui cellulase gene cluster containing the man5A gene and characterization of recombinant Man5A.包含man5A基因的酒井梭菌纤维素酶基因簇分析及重组Man5A的特性研究
Biosci Biotechnol Biochem. 2010;74(10):2077-82. doi: 10.1271/bbb.100458. Epub 2010 Oct 7.
3
Cellulosomes: highly efficient nanomachines designed to deconstruct plant cell wall complex carbohydrates.纤维小体:高度有效的纳米机器,旨在解构植物细胞壁复杂碳水化合物。
Annu Rev Biochem. 2010;79:655-81. doi: 10.1146/annurev-biochem-091208-085603.
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Chem Rec. 2008;8(6):364-77. doi: 10.1002/tcr.20160.
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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics.碳水化合物活性酶数据库(CAZy):糖原组学的专业资源。
Nucleic Acids Res. 2009 Jan;37(Database issue):D233-8. doi: 10.1093/nar/gkn663. Epub 2008 Oct 5.
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9
The interaction of a carbohydrate-binding module from a Clostridium perfringens N-acetyl-beta-hexosaminidase with its carbohydrate receptor.产气荚膜梭菌N-乙酰-β-己糖胺酶的碳水化合物结合模块与其碳水化合物受体的相互作用。
J Biol Chem. 2006 Dec 8;281(49):37748-57. doi: 10.1074/jbc.M606126200. Epub 2006 Sep 21.
10
Galactose recognition by the carbohydrate-binding module of a bacterial sialidase.细菌唾液酸酶的碳水化合物结合模块对半乳糖的识别
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甘露聚糖结合家族 32 碳水化合物结合模块对附加甘露聚糖酶活性的影响。

Influence of a mannan binding family 32 carbohydrate binding module on the activity of the appended mannanase.

机构信息

Applied Microbiology Laboratory, Graduate School of Bioresources, Mie University, Tsu, Japan.

出版信息

Appl Environ Microbiol. 2012 Jul;78(14):4781-7. doi: 10.1128/AEM.07457-11. Epub 2012 May 4.

DOI:10.1128/AEM.07457-11
PMID:22562994
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3416382/
Abstract

In general, cellulases and hemicellulases are modular enzymes in which the catalytic domain is appended to one or more noncatalytic carbohydrate binding modules (CBMs). CBMs, by concentrating the parental enzyme at their target polysaccharide, increase the capacity of the catalytic module to bind the substrate, leading to a potentiation in catalysis. Clostridium thermocellum hypothetical protein Cthe_0821, defined here as C. thermocellum Man5A, is a modular protein comprising an N-terminal signal peptide, a family 5 glycoside hydrolase (GH5) catalytic module, a family 32 CBM (CBM32), and a C-terminal type I dockerin module. Recent proteomic studies revealed that Cthe_0821 is one of the major cellulosomal enzymes when C. thermocellum is cultured on cellulose. Here we show that the GH5 catalytic module of Cthe_0821 displays endomannanase activity. C. thermocellum Man5A hydrolyzes soluble konjac glucomannan, soluble carob galactomannan, and insoluble ivory nut mannan but does not attack the highly galactosylated mannan from guar gum, suggesting that the enzyme prefers unsubstituted β-1,4-mannoside linkages. The CBM32 of C. thermocellum Man5A displays a preference for the nonreducing ends of mannooligosaccharides, although the protein module exhibits measurable affinity for the termini of β-1,4-linked glucooligosaccharides such as cellobiose. CBM32 potentiates the activity of C. thermocellum Man5A against insoluble mannans but has no significant effect on the capacity of the enzyme to hydrolyze soluble galactomannans and glucomannans. The product profile of C. thermocellum Man5A is affected by the presence of CBM32.

摘要

一般来说,纤维素酶和半纤维素酶是模块化酶,其中催化结构域附加到一个或多个非催化碳水化合物结合模块(CBM)上。CBM 通过将亲本酶浓缩在其靶多糖上,增加了催化模块与底物结合的能力,从而增强了催化作用。这里定义的热纤梭菌假定蛋白 Cthe_0821 是一种模块化蛋白,包含一个 N 端信号肽、一个家族 5 糖苷水解酶(GH5)催化模块、一个家族 32 CBM(CBM32)和一个 C 端类型 I 衔接子模块。最近的蛋白质组学研究表明,当热纤梭菌在纤维素上培养时,Cthe_0821 是主要的细胞外酶之一。在这里,我们证明 Cthe_0821 的 GH5 催化模块具有内切甘露聚糖酶活性。C. thermocellum Man5A 水解可溶性魔芋甘露聚糖、可溶性角豆半乳甘露聚糖和不溶性象牙坚果甘露聚糖,但不攻击瓜尔胶中高度半乳糖化的甘露聚糖,表明该酶更喜欢未取代的β-1,4-甘露糖苷键。C. thermocellum Man5A 的 CBM32 对甘露寡糖的非还原端表现出偏好,尽管该蛋白模块对β-1,4 连接的葡寡糖如纤维二糖的末端表现出可测量的亲和力。CBM32 增强了 C. thermocellum Man5A 对不溶性甘露聚糖的活性,但对酶水解可溶性半乳甘露聚糖和甘露聚糖的能力没有显著影响。CBM32 的存在影响了 C. thermocellum Man5A 的产物谱。