核糖体RNA基因进化中的“补偿性滑移”
'Compensatory slippage' in the evolution of ribosomal RNA genes.
作者信息
Hancock J M, Dover G A
机构信息
Department of Genetics, University of Cambridge, UK.
出版信息
Nucleic Acids Res. 1990 Oct 25;18(20):5949-54. doi: 10.1093/nar/18.20.5949.
Abstract
The distribution patterns of shared short repetitive motifs in the expansion segments of the large subunit rRNA genes of different species show that these segments are coevolving as a set and that in two examined vertebrate species the RNA secondary structures are conserved as a consequence of runs of motifs in one region being compensated by complementary motifs in another. These unusual processes, involving replication-slippage, have implications for the evolution of ribosomal RNA and for the use of the rDNA multigene family as a 'molecular clock' for assessing relationships between species.
摘要
不同物种的大亚基核糖体RNA基因扩增片段中共享短重复基序的分布模式表明，这些片段作为一个整体共同进化，并且在两个被研究的脊椎动物物种中，RNA二级结构得以保守，这是由于一个区域的基序串被另一个区域的互补基序所补偿。这些涉及复制滑移的异常过程，对核糖体RNA的进化以及将rDNA多基因家族用作评估物种间关系的“分子时钟”具有启示意义。
相似文献
1
'Compensatory slippage' in the evolution of ribosomal RNA genes.核糖体RNA基因进化中的“补偿性滑移”
Nucleic Acids Res. 1990 Oct 25;18(20):5949-54. doi: 10.1093/nar/18.20.5949.
2
Secondary structure constraints on the evolution of Drosophila 28 S ribosomal RNA expansion segments.果蝇28 S核糖体RNA扩展片段进化的二级结构限制
J Mol Biol. 1991 Jun 5;219(3):381-90. doi: 10.1016/0022-2836(91)90178-9.
3
Molecular coevolution among cryptically simple expansion segments of eukaryotic 26S/28S rRNAs.真核生物26S/28S核糖体RNA隐秘简单扩展片段间的分子协同进化
Mol Biol Evol. 1988 Jul;5(4):377-91. doi: 10.1093/oxfordjournals.molbev.a040505.
4
Evolution of the secondary structures and compensatory mutations of the ribosomal RNAs of Drosophila melanogaster.黑腹果蝇核糖体RNA二级结构的进化及补偿性突变
Mol Biol Evol. 1988 Jul;5(4):393-414. doi: 10.1093/oxfordjournals.molbev.a040501.
5
Complete sequences of the rRNA genes of Drosophila melanogaster.黑腹果蝇rRNA基因的完整序列。
Mol Biol Evol. 1988 Jul;5(4):366-76. doi: 10.1093/oxfordjournals.molbev.a040500.
6
Oocyte and somatic 5S ribosomal RNA and 5S RNA encoding genes in Xenopus tropicalis.热带爪蟾中的卵母细胞和体细胞5S核糖体RNA及5S RNA编码基因。
Nucleic Acids Res. 1988 Sep 26;16(18):8803-15. doi: 10.1093/nar/16.18.8803.
7
Evolution of eukaryotic rRNA: constraints imposed by RNA interactions.真核生物核糖体RNA的进化：RNA相互作用所施加的限制
Cold Spring Harb Symp Quant Biol. 1987;52:709-19. doi: 10.1101/sqb.1987.052.01.080.
8
The rDNA of C. elegans: sequence and structure.秀丽隐杆线虫的核糖体DNA：序列与结构
Nucleic Acids Res. 1986 Mar 11;14(5):2345-64. doi: 10.1093/nar/14.5.2345.
9
Complementarity of conserved sequence elements present in 28S ribosomal RNA and in ribosomal protein genes of Xenopus laevis and Xenopus tropicalis.非洲爪蟾（Xenopus laevis）和热带爪蟾（Xenopus tropicalis）28S核糖体RNA及核糖体蛋白基因中保守序列元件的互补性
Gene. 1986;49(3):371-6. doi: 10.1016/0378-1119(86)90373-2.
10
High evolutionary divergence of the 5.8S ribosomal DNA in Mimulus glaucescens (Scrophulariaceae).沟酸浆（玄参科）5.8S核糖体DNA的高度进化分歧
Plant Mol Biol. 1993 Jul;22(4):691-6. doi: 10.1007/BF00047409.
引用本文的文献
1
Evolution of helix formation in the ribosomal Internal Transcribed Spacer 2 (ITS2) and its significance for RNA secondary structures.核糖体内部转录间隔区2（ITS2）中螺旋结构的演变及其对RNA二级结构的意义。
J Mol Evol. 2014 Jun;78(6):324-37. doi: 10.1007/s00239-014-9625-0. Epub 2014 Jun 8.
2
Intra-genomic ribosomal RNA polymorphism and morphological variation in Elphidium macellum suggests inter-specific hybridization in foraminifera.有孔虫属中基因组内核糖体 RNA 多态性和形态变异表明种间杂交。
PLoS One. 2012;7(2):e32373. doi: 10.1371/journal.pone.0032373. Epub 2012 Feb 29.
3
Evolutionary triplet models of structured RNA.结构化RNA的进化三联体模型
PLoS Comput Biol. 2009 Aug;5(8):e1000483. doi: 10.1371/journal.pcbi.1000483. Epub 2009 Aug 28.
4
Length variation in 18S rRNA expansion segment 43/e4 of Daphnia obtusa: ancient or recurring polymorphism?
J Mol Evol. 2009 Aug;69(2):142-9. doi: 10.1007/s00239-009-9257-y. Epub 2009 Jul 7.
5
Identification of conserved secondary structures and expansion segments in enod40 RNAs reveals new enod40 homologues in plants.对结瘤早期表达基因40（ENOD40）RNA中保守二级结构和扩展片段的鉴定揭示了植物中新型结瘤早期表达基因40同源物。
Nucleic Acids Res. 2007;35(9):3144-52. doi: 10.1093/nar/gkm173. Epub 2007 Apr 22.
6
The European ribosomal RNA database.欧洲核糖体RNA数据库。
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D101-3. doi: 10.1093/nar/gkh065.
7
Transcription analysis of two disparate rRNA operons in the halophilic archaeon Haloarcula marismortui.嗜盐古菌嗜盐碱红菌中两个不同rRNA操纵子的转录分析。
J Bacteriol. 1998 Sep;180(18):4804-13. doi: 10.1128/JB.180.18.4804-4813.1998.
8
Human ribosomal RNA variants from a single individual and their expression in different tissues.来自单个个体的人类核糖体RNA变体及其在不同组织中的表达。
Nucleic Acids Res. 1996 Dec 1;24(23):4817-24. doi: 10.1093/nar/24.23.4817.
9
Simplicity-correlated size growth of the nuclear 28S ribosomal RNA D3 expansion segment in the crustacean order Isopoda.甲壳纲等足目动物中核糖体28S核RNA D3扩展片段的简单性相关大小增长
J Mol Evol. 1996 Feb;42(2):211-23. doi: 10.1007/BF02198847.
10
Sequence variations in the large-subunit ribosomal RNA gene of Ammonia (Foraminifera, Protozoa) and their evolutionary implications.氨型有孔虫（有孔虫纲，原生动物）大亚基核糖体RNA基因的序列变异及其进化意义。
J Mol Evol. 1996 Aug;43(2):145-51. doi: 10.1007/BF02337359.
本文引用的文献
1
Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing.DNA测序鸟枪法产生的凝胶读数数据的计算机处理自动化。
Nucleic Acids Res. 1982 Aug 11;10(15):4731-51. doi: 10.1093/nar/10.15.4731.
2
Molecular drive: a cohesive mode of species evolution.分子驱动：物种进化的一种凝聚模式。
Nature. 1982 Sep 9;299(5879):111-7. doi: 10.1038/299111a0.
3
A comprehensive set of sequence analysis programs for the VAX.一套适用于VAX的综合序列分析程序。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387-95. doi: 10.1093/nar/12.1part1.387.
4
Sequence analysis of 28S ribosomal DNA from the amphibian Xenopus laevis.来自非洲爪蟾（Xenopus laevis）的28S核糖体DNA序列分析。
Nucleic Acids Res. 1983 Nov 25;11(22):7795-817. doi: 10.1093/nar/11.22.7795.
5
The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes.小鼠28S rRNA基因的完整核苷酸序列。对高等真核生物大亚基rRNA大小增加过程的启示。
Nucleic Acids Res. 1984 Apr 25;12(8):3563-83. doi: 10.1093/nar/12.8.3563.
6
Structure of ribosomal RNA.核糖体RNA的结构。
Annu Rev Biochem. 1984;53:119-62. doi: 10.1146/annurev.bi.53.070184.001003.
7
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.利用热力学和辅助信息对大型RNA序列进行最优计算机折叠
Nucleic Acids Res. 1981 Jan 10;9(1):133-48. doi: 10.1093/nar/9.1.133.
8
Variation among human 28S ribosomal RNA genes.人类28S核糖体RNA基因的变异
Proc Natl Acad Sci U S A. 1985 Nov;82(22):7666-70. doi: 10.1073/pnas.82.22.7666.
9
Cryptic simplicity in DNA is a major source of genetic variation.DNA 中隐秘的简单性是遗传变异的主要来源。
Nature. 1986;322(6080):652-6. doi: 10.1038/322652a0.
10
Clones of human ribosomal DNA containing the complete 18 S-rRNA and 28 S-rRNA genes. Characterization, a detailed map of the human ribosomal transcription unit and diversity among clones.包含完整18 S - rRNA和28 S - rRNA基因的人类核糖体DNA克隆。特征分析、人类核糖体转录单位的详细图谱以及克隆间的多样性。
Biochem J. 1987 Sep 1;246(2):519-27. doi: 10.1042/bj2460519.
Zotero 插件