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通过 R(1ρ)测量互变的基态和激发态蛋白质中甲基 13C 化学位移差的标志:在 αB-晶体蛋白中的应用。

Measurement of the signs of methyl 13C chemical shift differences between interconverting ground and excited protein states by R(1ρ): an application to αB-crystallin.

机构信息

Department of Molecular Genetics, The University of Toronto, Toronto, ON M5S 1A8, Canada.

出版信息

J Biomol NMR. 2012 May;53(1):1-12. doi: 10.1007/s10858-012-9617-6. Epub 2012 Apr 5.

DOI:10.1007/s10858-012-9617-6
PMID:22476760
Abstract

Carr-Purcell-Meiboom-Gill relaxation dispersion (CPMG RD) NMR spectroscopy has emerged as a powerful tool for quantifying the kinetics and thermodynamics of millisecond time-scale exchange processes involving the interconversion between a visible ground state and one or more minor, sparsely populated invisible 'excited' conformational states. Recently it has also become possible to determine atomic resolution structural models of excited states using a wide array of CPMG RD approaches. Analysis of CPMG RD datasets provides the magnitudes of the chemical shift differences between the ground and excited states, Δϖ, but not the sign. In order to obtain detailed structural insights from, for example, excited state chemical shifts and residual dipolar coupling measurements, these signs are required. Here we present an NMR experiment for obtaining signs of (13)C chemical shift differences of (13)CH(3) methyl groups using weak field off-resonance R(1ρ) relaxation measurements. The accuracy of the method is established by using an exchanging system where the invisible, excited state can be converted to the visible, ground state by altering sample conditions so that the signs of Δϖ values obtained from the spin-lock approach can be validated against those measured directly. Further, the spin-lock experiments are compared with the established H(S/M)QC approach for measuring signs of chemical shift differences and the relative strengths of each method are discussed. In the case of the 650 kDa human αB-crystallin complex where there are large transverse relaxation differences between ground and excited state spins the R(1ρ) method is shown to be superior to more 'traditional' experiments for sign determination.

摘要

Carr-Purcell-Meiboom-Gill 弛豫分散(CPMG RD)NMR 光谱学已成为一种强大的工具,可用于量化涉及可见基态与一个或多个少数、稀疏占据的不可见“激发”构象态之间转换的毫秒时间尺度交换过程的动力学和热力学。最近,使用各种 CPMG RD 方法也有可能确定激发态的原子分辨率结构模型。CPMG RD 数据集的分析提供了基态和激发态之间化学位移差(Δϖ)的幅度,但没有符号。为了从例如激发态化学位移和残差偶极耦合测量中获得详细的结构见解,需要这些符号。在这里,我们提出了一种使用弱磁场离共振 R(1ρ)弛豫测量来获得(13)CH(3)甲基(13)C 化学位移差异符号的 NMR 实验。该方法的准确性通过使用交换系统来建立,其中可以通过改变样品条件将不可见的激发态转换为可见的基态,从而可以根据自旋锁定方法获得的Δϖ值的符号来验证那些直接测量的值。此外,将自旋锁定实验与已建立的 H(S/M)QC 方法进行比较,以测量化学位移差异的符号,并讨论每种方法的相对强度。在 650 kDa 人αB-晶体蛋白复合物的情况下,基态和激发态自旋之间存在较大的横向弛豫差异,结果表明 R(1ρ)方法在确定符号方面优于更“传统”的实验。

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本文引用的文献

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