肠杆菌科阪崎肠杆菌温和噬菌体 ENT39118 的全基因组序列
Complete genome of temperate phage ENT39118 from Cronobacter sakazakii.
机构信息
Department of Food Science and Biotechnology, College of Engineering, Gachon University, Sungnam-Si, Kyunggi-Do, South Korea.
出版信息
J Virol. 2012 May;86(9):5400-1. doi: 10.1128/JVI.00345-12.
Abstract
Cronobacter sakazakii infection is particularly harmful to infants, and putative virulence factors of prophage origin have been identified in C. sakazakii. In this study, the phage ENT39118 was isolated from wild-type C. sakazakii; it belongs to the family Siphoviridae. The genomic sequence of phage ENT39118 was composed of circular double-stranded DNA with a length of 39,012 bp. The sequence of ENT39118 showed weak sequence similarity to some reported regions of the prophage sequences in the C. sakazakii BAA-894 genome. To our knowledge, this is the first study of the genomic sequencing and annotation of this temperate phage, which was obtained from a C. sakazakii isolate from powdered infant formula.
摘要
阪崎克罗诺杆菌感染对婴儿尤其有害，已在阪崎克罗诺杆菌中鉴定出源自噬菌体的假定毒力因子。在本研究中，从野生型阪崎克罗诺杆菌中分离出噬菌体 ENT39118；它属于肌尾噬菌体科。噬菌体 ENT39118 的基因组序列由长度为 39012bp 的圆形双链 DNA 组成。ENT39118 的序列与阪崎克罗诺杆菌 BAA-894 基因组中某些已报道的噬菌体序列的部分区域显示出较弱的序列相似性。据我们所知，这是首次对从粉状婴儿配方奶粉中分离出的这种温和噬菌体进行基因组测序和注释的研究。
相似文献
1
Complete genome of temperate phage ENT39118 from Cronobacter sakazakii.肠杆菌科阪崎肠杆菌温和噬菌体 ENT39118 的全基因组序列
J Virol. 2012 May;86(9):5400-1. doi: 10.1128/JVI.00345-12.
2
Genomic analysis of bacteriophage ESP2949-1, which is virulent for Cronobacter sakazakii.肠杆菌科沙雷氏菌噬菌体 ESP2949-1 的基因组分析，该噬菌体对肠杆菌科沙雷氏菌具有毒性。
Arch Virol. 2012 Jan;157(1):199-202. doi: 10.1007/s00705-011-1147-0. Epub 2011 Nov 1.
3
Complete genome sequence of Cronobacter sakazakii bacteriophage CR3.阪崎克罗诺杆菌噬菌体 CR3 的全基因组序列
J Virol. 2012 Jun;86(11):6367-8. doi: 10.1128/JVI.00636-12.
4
Complete genome sequence of Cronobacter sakazakii temperate bacteriophage phiES15.阪崎克罗诺杆菌温和噬菌体 phiES15 的全基因组序列。
J Virol. 2012 Jul;86(14):7713-4. doi: 10.1128/JVI.01042-12.
5
Complete genome sequence of Cronobacter sakazakii bacteriophage vB_CsaM_GAP161.阪崎克罗诺杆菌噬菌体 vB_CsaM_GAP161 的全基因组序列
J Virol. 2012 Dec;86(24):13806-7. doi: 10.1128/JVI.02546-12.
6
Characterization and Genomic Analysis of Novel Bacteriophage ΦCS01 Targeting .新型噬菌体ΦCS01靶向性的表征与基因组分析
J Microbiol Biotechnol. 2019 May 28;29(5):696-703. doi: 10.4014/jmb.1812.12054.
7
A Novel Bacteriophage Targeting Cronobacter sakazakii Is a Potential Biocontrol Agent in Foods.一种靶向阪崎肠杆菌的新型噬菌体是食品中潜在的生物防治剂。
Appl Environ Microbiol. 2015 Oct 23;82(1):192-201. doi: 10.1128/AEM.01827-15. Print 2016 Jan 1.
8
Characterization and genomic analysis of JC01, a novel bacteriophage infecting Cronobacter sakazakii.鉴定和基因组分析一株新型噬菌体 JC01，该噬菌体可感染阪崎克罗诺杆菌。
Arch Virol. 2022 Dec 17;168(1):1. doi: 10.1007/s00705-022-05663-9.
9
A Newly Isolated Bacteriophage, PBES 02, Infecting Cronobacter sakazakii.一种新分离的噬菌体PBES 02，可感染阪崎肠杆菌。
J Microbiol Biotechnol. 2016 Sep 28;26(9):1629-35. doi: 10.4014/jmb.1605.05020.
10
Complete genomic sequence of virulent Cronobacter sakazakii phage ESSI-2 isolated from swine feces.从猪粪便中分离的强毒 Cronobacter sakazakii 噬菌体 ESSI-2 的全基因组序列。
Arch Virol. 2011 Apr;156(4):721-4. doi: 10.1007/s00705-011-0934-y. Epub 2011 Feb 11.
引用本文的文献
1
Diverse Genotypes of spp. Associated with Dairy Farm Systems in Jiangsu and Shandong Provinces in China.与中国江苏省和山东省奶牛养殖系统相关的 spp. 的不同基因型 。
Foods. 2024 Mar 13;13(6):871. doi: 10.3390/foods13060871.
2
Characterization of Strains Originating from Plant-Origin Foods Using Comparative Genomic Analyses and Zebrafish Infectivity Studies.利用比较基因组分析和斑马鱼感染性研究对源自植物源性食品的菌株进行特征分析。
Microorganisms. 2022 Jul 11;10(7):1396. doi: 10.3390/microorganisms10071396.
3
A Novel Bacteriophage Targeting Cronobacter sakazakii Is a Potential Biocontrol Agent in Foods.一种靶向阪崎肠杆菌的新型噬菌体是食品中潜在的生物防治剂。
Appl Environ Microbiol. 2015 Oct 23;82(1):192-201. doi: 10.1128/AEM.01827-15. Print 2016 Jan 1.
4
Cronobacter: an emergent pathogen causing meningitis to neonates through their feeds.克罗诺杆菌：一种通过食物引起新生儿脑膜炎的新兴病原体。
Sci Prog. 2014;97(Pt 2):154-72. doi: 10.3184/003685014X13994743930498.
5
The genome and proteome of Serratia bacteriophage η which forms unstable lysogens.不稳定溶源菌 Serratia 噬菌体 η 的基因组和蛋白质组。
Virol J. 2014 Jan 16;11:6. doi: 10.1186/1743-422X-11-6.
6
The Genome of Cronobacter sakazakii Bacteriophage vB_CsaP_GAP227 Suggests a New Genus within the Autographivirinae.阪崎肠杆菌噬菌体vB_CsaP_GAP227的基因组表明在自剪接病毒亚科内存在一个新属。
Genome Announc. 2013 Jan;1(1). doi: 10.1128/genomeA.00122-12. Epub 2013 Feb 14.
7
Genome sequence of Cronobacter sakazakii myovirus vB_CsaM_GAP31.阪崎克罗诺杆菌肌尾噬菌体 vB_CsaM_GAP31 的基因组序列。
J Virol. 2012 Dec;86(24):13830-1. doi: 10.1128/JVI.02629-12.
8
Complete genome sequence of Cronobacter sakazakii bacteriophage vB_CsaM_GAP161.阪崎克罗诺杆菌噬菌体 vB_CsaM_GAP161 的全基因组序列
J Virol. 2012 Dec;86(24):13806-7. doi: 10.1128/JVI.02546-12.
本文引用的文献
1
Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species.阪崎克罗诺杆菌 BAA-894 的全基因组序列和与其他克罗诺杆菌属种的比较基因组杂交分析。
PLoS One. 2010 Mar 8;5(3):e9556. doi: 10.1371/journal.pone.0009556.
2
Genome rearrangements in host-range mutants of the polyvalent staphylococcal bacteriophage 812.多价葡萄球菌噬菌体812宿主范围突变体中的基因组重排
Folia Microbiol (Praha). 2007;52(4):331-8. doi: 10.1007/BF02932087.
3
CDD: a conserved domain database for interactive domain family analysis.CDD：用于交互式结构域家族分析的保守结构域数据库。
Nucleic Acids Res. 2007 Jan;35(Database issue):D237-40. doi: 10.1093/nar/gkl951. Epub 2006 Nov 29.
4
Evolution of foodborne pathogens via temperate bacteriophage-mediated gene transfer.食源性病原体通过温和噬菌体介导的基因转移而发生的进化。
Foodborne Pathog Dis. 2005 Winter;2(4):287-303. doi: 10.1089/fpd.2005.2.287.
5
Phage regulatory circuits and virulence gene expression.噬菌体调控回路与毒力基因表达。
Curr Opin Microbiol. 2005 Aug;8(4):459-65. doi: 10.1016/j.mib.2005.06.001.
6
Prophages and bacterial genomics: what have we learned so far?原噬菌体与细菌基因组学：我们目前了解到了什么？
Mol Microbiol. 2003 Jul;49(2):277-300. doi: 10.1046/j.1365-2958.2003.03580.x.
7
Bacteriophage observations and evolution.噬菌体观察与进化
Res Microbiol. 2003 May;154(4):245-51. doi: 10.1016/S0923-2508(03)00067-6.
8
Database resources of the National Center for Biotechnology.国家生物技术信息中心的数据库资源。
Nucleic Acids Res. 2003 Jan 1;31(1):28-33. doi: 10.1093/nar/gkg033.
9
Enterobacter sakazakii: a review.阪崎肠杆菌综述
Int J Food Microbiol. 1997 Feb;34(2):103-13. doi: 10.1016/s0168-1605(96)01172-5.
10
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.tRNAscan-SE：用于改进基因组序列中转运RNA基因检测的程序。
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.
Zotero 插件