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在被子植物叶绿体中剪接特定的 II 组内含子所需的短 PPR 蛋白。

A short PPR protein required for the splicing of specific group II introns in angiosperm chloroplasts.

机构信息

Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403, USA.

出版信息

RNA. 2012 Jun;18(6):1197-209. doi: 10.1261/rna.032623.112. Epub 2012 Apr 10.

DOI:10.1261/rna.032623.112
PMID:22495966
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3358642/
Abstract

A maize gene designated thylakoid assembly 8 (tha8) emerged from a screen for nuclear mutations that cause defects in the biogenesis of chloroplast thylakoid membranes. The tha8 gene encodes an unusual member of the pentatricopeptide repeat (PPR) family, a family of helical repeat proteins that participate in various aspects of organellar RNA metabolism. THA8 localizes to chloroplasts, where it associates specifically with the ycf3-2 and trnA group II introns. The splicing of ycf3-2 is eliminated in tha8 mutants, and trnA splicing is strongly compromised. Reverse-genetic analysis of the tha8 ortholog in Arabidopsis thaliana showed that these molecular functions are conserved, although null alleles are embryo lethal in Arabidopsis and seedling lethal in maize. Whereas most PPR proteins have more than 10 PPR motifs, THA8 belongs to a subfamily of plant PPR proteins with only four PPR motifs and little else. THA8 is the first member of this subfamily with a defined molecular function, and illustrates that even small PPR proteins have the potential to mediate specific intermolecular interactions in vivo.

摘要

一个被命名为类囊体装配 8(tha8)的玉米基因是从一个筛选核突变的筛选中出现的,这些突变导致叶绿体类囊体膜生物发生缺陷。tha8 基因编码五肽重复(PPR)家族的一个不寻常成员,该家族是一种螺旋重复蛋白,参与细胞器 RNA 代谢的各个方面。THA8 定位于叶绿体,在那里它与 ycf3-2 和 trnA 组 II 内含子特异性结合。在 tha8 突变体中,ycf3-2 的剪接被消除,trnA 的剪接受到严重影响。拟南芥中 tha8 同源物的反向遗传分析表明,这些分子功能是保守的,尽管在拟南芥中,tha8 的缺失等位基因是胚胎致死的,而在玉米中是幼苗致死的。虽然大多数 PPR 蛋白具有超过 10 个 PPR 基序,但 THA8 属于植物 PPR 蛋白的一个亚家族,只有四个 PPR 基序,几乎没有其他基序。THA8 是这个亚家族中第一个具有明确分子功能的成员,它表明即使是小的 PPR 蛋白也有可能在体内介导特定的分子间相互作用。

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Nucleoid-enriched proteomes in developing plastids and chloroplasts from maize leaves: a new conceptual framework for nucleoid functions.富含类核的玉米叶片发育中的质体和叶绿体蛋白质组:类核功能的新概念框架。
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Structure of human mitochondrial RNA polymerase.人线粒体 RNA 聚合酶的结构。
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APO1 promotes the splicing of chloroplast group II introns and harbors a plant-specific zinc-dependent RNA binding domain.APO1 促进质体组 II 内含子的剪接,并含有一个具有植物特异性的锌依赖的 RNA 结合域。
Plant Cell. 2011 Mar;23(3):1082-92. doi: 10.1105/tpc.111.084335. Epub 2011 Mar 18.
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Expression of plastid genes: organelle-specific elaborations on a prokaryotic scaffold.质体基因的表达:基于原核生物框架的细胞器特异性精细调控
Plant Physiol. 2011 Apr;155(4):1520-32. doi: 10.1104/pp.110.171231. Epub 2011 Feb 23.
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OTP70 is a pentatricopeptide repeat protein of the E subgroup involved in splicing of the plastid transcript rpoC1.OTP70 是 E 亚组的五肽重复蛋白,参与质体转录本 rpoC1 的剪接。
Plant J. 2011 Feb;65(4):532-42. doi: 10.1111/j.1365-313X.2010.04441.x. Epub 2011 Jan 4.
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Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution.在被子植物进化过程中,对与恢复基因相似的基因的选择模式揭示了核基因组和线粒体基因组之间的冲突。
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Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein.五肽重复蛋白稳定 RNA 和促进翻译激活的机制。
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Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.鉴定拟南芥胚胎发育过程中所需的定位于叶绿体的核基因编码的蛋白质。
Plant Physiol. 2011 Apr;155(4):1678-89. doi: 10.1104/pp.110.168120. Epub 2010 Dec 7.
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Identification of a pentatricopeptide repeat protein implicated in splicing of intron 1 of mitochondrial nad7 transcripts.鉴定一个五肽重复蛋白,该蛋白与线粒体 nad7 转录本内含子 1 的剪接有关。
J Biol Chem. 2010 Oct 15;285(42):32192-9. doi: 10.1074/jbc.M110.147603. Epub 2010 Aug 3.