Nordic Center for Earth Evolution, University of Southern Denmark, Odense, Denmark.
ISME J. 2012 Nov;6(11):2078-90. doi: 10.1038/ismej.2012.41. Epub 2012 May 10.
Dissimilatory manganese reduction dominates anaerobic carbon oxidation in marine sediments with high manganese oxide concentrations, but the microorganisms responsible for this process are largely unknown. In this study, the acetate-utilizing manganese-reducing microbiota in geographically well-separated, manganese oxide-rich sediments from Gullmar Fjord (Sweden), Skagerrak (Norway) and Ulleung Basin (Korea) were analyzed by 16S rRNA-stable isotope probing (SIP). Manganese reduction was the prevailing terminal electron-accepting process in anoxic incubations of surface sediments, and even the addition of acetate stimulated neither iron nor sulfate reduction. The three geographically distinct sediments harbored surprisingly similar communities of acetate-utilizing manganese-reducing bacteria: 16S rRNA of members of the genera Colwellia and Arcobacter and of novel genera within the Oceanospirillaceae and Alteromonadales were detected in heavy RNA-SIP fractions from these three sediments. Most probable number (MPN) analysis yielded up to 10(6) acetate-utilizing manganese-reducing cells cm(-3) in Gullmar Fjord sediment. A 16S rRNA gene clone library that was established from the highest MPN dilutions was dominated by sequences of Colwellia and Arcobacter species and members of the Oceanospirillaceae, supporting the obtained RNA-SIP results. In conclusion, these findings strongly suggest that (i) acetate-dependent manganese reduction in manganese oxide-rich sediments is catalyzed by members of taxa (Arcobacter, Colwellia and Oceanospirillaceae) previously not known to possess this physiological function, (ii) similar acetate-utilizing manganese reducers thrive in geographically distinct regions and (iii) the identified manganese reducers differ greatly from the extensively explored iron reducers in marine sediments.
异化锰还原在富含氧化锰的海洋沉积物中主导着厌氧碳氧化,但负责这一过程的微生物在很大程度上尚不清楚。在这项研究中,通过 16S rRNA-稳定同位素探针(SIP)分析了来自于瑞典古尔马峡湾(Gullmar Fjord)、挪威斯卡格拉克海峡(Skagerrak)和韩国郁陵盆地(Ulleung Basin)的地理位置相隔较远、富含氧化锰的沉积物中的利用乙酸盐的锰还原微生物群。在缺氧沉积物的培养中,锰还原是主要的末端电子受体接受过程,甚至添加乙酸盐也不会刺激铁或硫酸盐还原。这三个地理位置截然不同的沉积物中,存在着令人惊讶的相似的利用乙酸盐的锰还原细菌群落:在这三个沉积物的重 RNA-SIP 馏分中检测到了属 Colwellia 和 Arcobacter 以及海洋螺旋菌科(Oceanospirillaceae)和交替单胞菌目(Alteromonadales)中的新属的成员的 16S rRNA。最大可能数(MPN)分析在古尔马峡湾沉积物中获得了高达 10(6)个利用乙酸盐的锰还原细胞 cm(-3)。从最高 MPN 稀释度建立的 16S rRNA 基因克隆文库主要由 Colwellia 和 Arcobacter 种以及海洋螺旋菌科的成员序列组成,支持了获得的 RNA-SIP 结果。总之,这些发现强烈表明:(i)富含氧化锰的沉积物中依赖乙酸盐的锰还原是由以前未知具有这种生理功能的分类群(Arcobacter、Colwellia 和海洋螺旋菌科)的成员催化的,(ii)在地理位置不同的地区存在相似的利用乙酸盐的锰还原菌,(iii)鉴定出的锰还原菌与海洋沉积物中广泛研究的铁还原菌有很大的不同。