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长程校正 TDDFT 计算探索的鸟嘌呤-胞嘧啶碱基对的光反应通道。

Photoreaction channels of the guanine-cytosine base pair explored by long-range corrected TDDFT calculations.

机构信息

Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan.

出版信息

Phys Chem Chem Phys. 2012 Jul 7;14(25):8866-77. doi: 10.1039/c2cp23867e. Epub 2012 May 17.

DOI:10.1039/c2cp23867e
PMID:22596076
Abstract

Photoinduced processes in the Watson-Crick guanine-cytosine base pair are comprehensively studied by means of long-range corrected (LC) TDDFT calculations of potential energy profiles using the LC-BLYP and CAM-B3LYP functionals. The ab initio CC2 method and the conventional TDDFT method with the B3LYP functional are also employed to assess the reliability of the LC-TDDFT method. The present approach allows us to compare the potential energy profiles at the same computational level for excited-state reactions of the base pair, including single and double proton transfer between the bases and nonradiative decay via ring puckering in each base. In particular, long-range correction to the TDDFT method is critical for a qualitatively correct description of the proton transfer reactions. The calculated energy profiles exhibit low barriers for out-of-plane deformation of the guanine moiety in the locally-excited state, which is expected to lead to a conical intersection with the ground state, as well as for single proton transfer from guanine to cytosine with the well-known electron-driven proton transfer mechanism. Thus the present results suggest that both processes can compete in hydrogen-bonded base pairs and play a significant role in the mechanism of photostability.

摘要

通过使用 LC-BLYP 和 CAM-B3LYP 泛函的长程校正(LC)TDDFT 计算,全面研究了 Watson-Crick 鸟嘌呤-胞嘧啶碱基对中的光诱导过程。还采用从头算 CC2 方法和传统的 B3LYP 函数 TDDFT 方法来评估 LC-TDDFT 方法的可靠性。本方法允许我们在相同的计算水平上比较碱基对的激发态反应的势能曲线,包括碱基之间的单质子和双质子转移以及每个碱基中的非辐射衰减通过环扭转。特别是,对 TDDFT 方法的长程校正对于质子转移反应的定性正确描述至关重要。计算出的能量曲线显示出局域激发态中鸟嘌呤部分的面外变形的低能垒,这有望导致与基态的交叉,以及具有著名的电子驱动质子转移机制的从鸟嘌呤到胞嘧啶的单质子转移。因此,目前的结果表明,这两个过程都可以在氢键碱基对中竞争,并在光稳定性机制中发挥重要作用。

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