Laboratory for the Study of Biosynthesis by Isotopic Spectroscopy, Interdisciplinary Chemistry: Synthesis, Analysis and Modeling (CEISAM), UMR6230, University of Nantes-CNRS , 2 rue de la Houssinière, BP 92208, F-44322 Nantes 3, France.
J Phys Chem B. 2012 Jul 12;116(27):7827-40. doi: 10.1021/jp304276v. Epub 2012 Jun 29.
The oxidation of (2'S)-nicotine in the active site of human cytochrome P450 2A6 has been subjected to a detailed analysis by theoretical quantum mechanical/molecular mechanical (QM/MM) calculations linked with a theoretical and experimental study of the associated isotope effects. The study has focused on seeking an explanation as to why oxidation at the 5'-carbon position (A) is favored over oxidation at the methyl carbon (CMe) position (B). It is deduced that the choice of hydrogen for abstraction is not determined by geometric features of the active site, but by the lower energy barrier associated with 5' oxidation. N-Demethylation leading to N-hydroxymethylnornicotine requires ca. 6.5 kcal/mol more energy to transfer a hydrogen atom than is required for oxidation on the carbon 5'. Neither protonation of the pyrrolidine nitrogen (N1') nor inclusion of a water molecule in the reaction process influences the balance between the two oxidation pathways. In both cases, the hydrogen transfer step is rate limiting. An analysis of the calculated kinetic isotope effects indicates that the presence of a (2)H in either the C5' or the CMepositions has a significant effect on the reaction kinetics. However, the experimental values of around 2.2-2.6 are considerably lower than those predicted by theoretical calculations (9.3 and 6.9 for C5' or the CMe positions, respectively, in the LS state of Cpd I), typical of the masking commonly found for CYP450 reactions. The fact that similar values are found for cotinine formation from both substrates, however, may indicate that the measured value is not that for H-abstraction but, rather, is a combined value for (2)H influence on electronic redistribution between iminium states of the pyrrolidine ring. This is the first time that oxidation at the C5' or the CMe positions has been directly compared and that isotope effects have been obtained for this reaction in a human cytochrome P450 reaction.
(2'S)-尼古丁在人细胞色素 P450 2A6 的活性部位的氧化已通过理论量子力学/分子力学(QM/MM)计算与相关同位素效应的理论和实验研究相结合进行了详细分析。该研究的重点是寻找为什么在 5'-碳位(A)发生氧化比在甲基碳(CMe)位(B)更有利的解释。可以推断,用于抽氢的氢的选择不是由活性部位的几何特征决定的,而是由与 5'氧化相关的较低能量障碍决定的。导致 N-羟甲基降烟碱的 N-去甲基化需要大约 6.5 kcal/mol 的能量来转移一个氢原子,而在碳 5'上的氧化需要的能量更多。吡咯烷氮(N1')的质子化或水分子在反应过程中的包含都不会影响两种氧化途径之间的平衡。在这两种情况下,氢转移步骤都是限速步骤。对计算的动力学同位素效应的分析表明,在 C5'或 CMepositions 中的(2)H 的存在对反应动力学有重大影响。然而,实验值约为 2.2-2.6,明显低于理论计算值(LS 状态下 Cpd I 中 C5'或 CMe 位置分别为 9.3 和 6.9),这是 CYP450 反应中常见的掩蔽现象。然而,从两种底物中形成可替宁时发现相似的值可能表明,测量值不是对 H 抽提的,而是对(2)H 对吡咯烷环亚胺态之间的电子再分布的影响的综合值。这是首次直接比较 C5'或 CMe 位置的氧化,并且在人细胞色素 P450 反应中获得了该反应的同位素效应。