Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA.
J Phys Chem A. 2010 Sep 2;114(34):9319-32. doi: 10.1021/jp1045518.
Model theoretical quantum mechanical (QM) calculations are described for the P-450 hydroxylation of methane, isobutane, and camphor that compare the concerted somersault H-abstraction mechanism with the oxidation step involving Cpd I. Special emphasis has been placed on maintaining a balanced basis set in the oxidation step. QM calculations, employing the 6-311+G(d,p) basis set on the Fe atom and all of the key surrounding atoms involved in the C-H abstraction step, reaffirm a mechanism involving rearrangement of the iron hydroperoxide group (FeO-OH --> FeO...HO()) in concert with hydrogen abstraction from the C-H bond of the substrate by the incipient bound hydroxyl radical HO(). The barrier for the somersault rearrangement of model Cpd 0 (FeO-OH) is calculated to be 21.4 kcal/mol in the absence of substrate. The overall activation energy for the oxidation of camphor involving the somersault motion of the FeO-OH group of P450 model porphyrin iron(III) hydroperoxide [Por(SH)Fe(III)-OOH(-)] --> [Por(SH)Fe(III)-O....HO(-)] in concert with hydrogen abstraction is DeltaE(++) = 12.4 kcal/mol. The corresponding abstraction of the hydrogen atom from the C-H bond of camphor by Cpd I has an activation barrier of 17.6 kcal/mol. Arguments are presented that the somersault rearrangement is induced by steric compression at the active site. Kinetic isotope effect data are discussed that provides compelling evidence for a rate-limiting step involving C-H bond cleavage.
描述了 P-450 甲烷、异丁烷和樟脑羟化的模型理论量子力学(QM)计算,比较了协同翻转 H 提取机制与涉及 Cpd I 的氧化步骤。特别强调了在氧化步骤中保持平衡基组。QM 计算采用 6-311+G(d,p)基组在 Fe 原子上和涉及 C-H 提取步骤的所有关键周围原子上,再次证实了涉及铁过氧化物基团(FeO-OH --> FeO...HO()) 重排与初生结合的羟基自由基 HO()从底物的 C-H 键中提取氢的机制。在没有底物的情况下,模型 Cpd 0(FeO-OH)的翻转重排的势垒计算为 21.4 kcal/mol。涉及 P450 模型卟啉铁(III)过氧化物[Por(SH)Fe(III)-OOH(-)]中 FeO-OH 基团翻转运动与氢提取协同氧化樟脑的总活化能[Por(SH)Fe(III)-O....HO(-)]为 DeltaE(++)=12.4 kcal/mol。通过 Cpd I 从樟脑的 C-H 键中提取氢原子的活化能垒为 17.6 kcal/mol。提出了翻转重排是由活性位点的空间压缩诱导的论点。讨论了动力学同位素效应数据,这些数据为涉及 C-H 键断裂的限速步骤提供了令人信服的证据。