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细胞色素P450复合酶I催化樟脑羟基化反应机理的理论研究

A theoretical study on the mechanism of camphor hydroxylation by compound I of cytochrome p450.

作者信息

Kamachi Takashi, Yoshizawa Kazunari

机构信息

Institute for Fundamental Research of Organic Chemistry, Kyushu University, Fukuoka 812-8581, Japan.

出版信息

J Am Chem Soc. 2003 Apr 16;125(15):4652-61. doi: 10.1021/ja0208862.

Abstract

Mechanistic and energetic aspects for the conversion of camphor to 5-exo-hydroxycamphor by the compound I iron-oxo species of cytochrome P450 are discussed from B3LYP DFT calculations. This reaction occurs in a two-step manner along the lines that the oxygen rebound mechanism suggests. The activation energy for the first transition state of the H atom abstraction at the C5 atom of camphor is computed to be more than 20 kcal/mol. This H atom abstraction is the rate-determining step in this hydroxylation reaction, leading to a reaction intermediate that involves a carbon radical species and the iron-hydroxo species. The second transition state of the rebound step that connects the reaction intermediate and the product alcohol complex lies a few kcal/mol below that for the H atom abstraction on the doublet and quartet potential energy surfaces. This energetic feature allows the virtually barrierless recombination in both spin states, being consistent with experimentally observed high stereoselectivity and brief lifetimes of the reaction intermediate. The overall energetic profile of the catalytic mechanism of camphor hydroxylation particularly with respect to why the high activation energy for the H atom abstraction is accessible under physiological conditions is also considered and calculated. According to a proton source model involving Thr252, Asp251, and two solvent water molecules (Biochemistry 1998, 37, 9211), the energetics for the conversion of the iron-peroxo species to compound I is studied. A significant energy over 50 kcal/mol is released in the course of this dioxygen activation process. The energy released in this chemical process is an important driving force in alkane hydroxylation by cytochrome P450. This energy is used for the access to the high activation energy for the H atom abstraction.

摘要

通过B3LYP密度泛函理论计算,讨论了细胞色素P450的化合物I铁氧物种将樟脑转化为5-外向羟基樟脑的机理和能量方面。该反应按照氧反弹机理所提示的方式分两步进行。计算得出,樟脑C5原子上氢原子提取的第一个过渡态的活化能超过20千卡/摩尔。这种氢原子提取是该羟基化反应的速率决定步骤,产生一个涉及碳自由基物种和铁羟基物种的反应中间体。连接反应中间体和产物醇配合物的反弹步骤的第二个过渡态在双峰和四重态势能面上比氢原子提取的过渡态低几千卡/摩尔。这种能量特征使得在两种自旋态下几乎无势垒重组,这与实验观察到的高立体选择性和反应中间体的短暂寿命一致。还考虑并计算了樟脑羟基化催化机理的整体能量分布,特别是关于为什么在生理条件下氢原子提取的高活化能是可及的。根据涉及Thr252、Asp251和两个溶剂水分子的质子源模型(《生物化学》1998年,37卷,9211页),研究了铁过氧物种向化合物I转化的能量学。在这个双氧激活过程中释放出超过50千卡/摩尔的大量能量。这个化学过程中释放的能量是细胞色素P450进行烷烃羟基化的重要驱动力。该能量用于获取氢原子提取所需的高活化能。

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