Martens Erik A, Kostadinov Rumen, Maley Carlo C, Hallatschek Oskar
Max Planck Research Group for Biophysics and Evolutionary Dynamics, MPI for Dynamics and Self-Organization, Göttingen, Germany.
New J Phys. 2011 Nov 1;13. doi: 10.1088/1367-2630/13/11/115014. Epub 2011 Nov 28.
Cancer results from a sequence of genetic and epigenetic changes which lead to a variety of abnormal phenotypes including increased proliferation and survival of somatic cells, and thus, to a selective advantage of pre-cancerous cells. The notion of cancer progression as an evolutionary process has been experiencing increasing interest in recent years. Many efforts have been made to better understand and predict the progression to cancer using mathematical models; these mostly consider the evolution of a well-mixed cell population, even though pre-cancerous cells often evolve in highly structured epithelial tissues. In this study, we propose a novel model of cancer progression that considers a spatially structured cell population where clones expand via adaptive waves. This model is used to assess two different paradigms of asexual evolution that have been suggested to delineate the process of cancer progression. The standard scenario of periodic selection assumes that driver mutations are accumulated strictly sequentially over time. However, when the mutation supply is sufficiently high, clones may arise simultaneously on distinct genetic backgrounds, and clonal adaptation waves interfere with each other. We find that in the presence of clonal interference, spatial structure increases the waiting time for cancer, leads to a patchwork structure of non-uniformly sized clones, decreases the survival probability of virtually neutral (passenger) mutations, and that genetic distance begins to increase over a characteristic length scale L(c). These characteristic features of clonal interference may help to predict the onset of cancers with pronounced spatial structure and to interpret spatially-sampled genetic data obtained from biopsies. Our estimates suggest that clonal interference likely occurs in the progression of colon cancer, and possibly other cancers where spatial structure matters.
癌症源于一系列遗传和表观遗传变化,这些变化会导致多种异常表型,包括体细胞增殖和存活增加,从而使癌前细胞具有选择性优势。近年来,将癌症进展视为一个进化过程的观点越来越受到关注。人们已经做出了许多努力,使用数学模型来更好地理解和预测癌症的进展;这些模型大多考虑的是均匀混合的细胞群体的进化,尽管癌前细胞通常在高度结构化的上皮组织中进化。在本研究中,我们提出了一种新的癌症进展模型,该模型考虑了一个空间结构化的细胞群体,其中克隆通过适应性波扩展。该模型用于评估两种不同的无性进化范式,这两种范式被认为可以描述癌症进展的过程。周期性选择的标准情形假设驱动突变严格按照时间顺序依次积累。然而,当突变供应足够高时,克隆可能会在不同的遗传背景上同时出现,并且克隆适应波会相互干扰。我们发现,在存在克隆干扰的情况下,空间结构会增加癌症出现的等待时间,导致克隆大小不均匀的拼凑结构,降低几乎中性(乘客)突变的存活概率,并且遗传距离在特征长度尺度L(c)上开始增加。克隆干扰的这些特征可能有助于预测具有明显空间结构的癌症的发生,并解释从活检中获得的空间采样遗传数据。我们的估计表明,克隆干扰可能发生在结肠癌的进展过程中,也可能发生在其他空间结构起重要作用的癌症中。