Department of Pharmaceutical Sciences, Leslie Dan Faculty of Pharmacy, University of Toronto, 144 College Street, Toronto, Ontario M5S 3M2, Canada.
Biochemistry. 2012 Jul 24;51(29):5784-90. doi: 10.1021/bi3006994. Epub 2012 Jul 10.
Volumetric characteristics of protein recognition events determine the direction of pressure-induced shifts in the recognition reaction, while also providing insights into the structural, dynamic, and hydration changes. We report changes in volume, ΔV, and adiabatic compressibility, ΔK(S), accompanying the binding of tri-N-acetylglucosamine [(GlcNAc)(3)] to lysozyme at 25 °C in a pH 5.5 sodium acetate buffer. We interpret our measured changes in volume and compressibility in terms of changes in hydration and dynamic properties of the protein. On the basis of our ΔV data, we find that 79 ± 44 water molecules are released to the bulk from the hydration shells of the protein and the ligand. Our ΔK(S) data suggest a 4 ± 2% decrease in the mean-square fluctuations of the intrinsic volume of the protein, <δV(M)(2)> (or a 2% decrease in δV(M)). Thus, the trisaccharide-bound state of the enzyme is less hydrated, more rigid, and less dynamic compared to the unbound state. In general, we discuss the importance of volumetric insights into the molecular origins of protein recognition events.
蛋白质识别事件的体积特征决定了压力诱导的识别反应方向的变化,同时也为结构、动态和水合变化提供了深入了解。我们报告了在 pH 5.5 醋酸钠缓冲液中,25°C 时三-N-乙酰葡萄糖胺[(GlcNAc)(3)]与溶菌酶结合时体积变化ΔV 和绝热压缩率变化ΔK(S)。我们根据测量到的体积和压缩率变化,解释了蛋白质的水合和动态性质的变化。基于我们的ΔV 数据,我们发现 79 ± 44 个水分子从蛋白质和配体的水合壳中释放到体相。我们的ΔK(S)数据表明,蛋白质的固有体积的均方涨落<δV(M)(2)>(或 δV(M)减少 2%)降低了 4 ± 2%。因此,与未结合状态相比,三糖结合状态的酶的水合程度更低、刚性更大、动态性更小。总的来说,我们讨论了对蛋白质识别事件的分子起源进行体积分析的重要性。