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利用简单重复序列区间(ISSR)标记对栽培凤梨科植物种质进行分子特征分析。

Molecular characterization of cultivated bromeliad accessions with Inter-Simple Sequence Repeat (ISSR) Markers.

作者信息

Zhang Fei, Ge Yaying, Wang Weiyong, Yu Xinying, Shen Xiaolan, Liu Jianxin, Liu Xiaojing, Tian Danqing, Shen Fuquan, Yu Yongming

机构信息

Flower Research and Development Centre, Zhejiang Academy of Agricutural Sciences, Hangzhou 311202, China.

出版信息

Int J Mol Sci. 2012;13(5):6040-6052. doi: 10.3390/ijms13056040. Epub 2012 May 18.

DOI:10.3390/ijms13056040
PMID:22754348
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3382752/
Abstract

Bromeliads are of great economic importance in flower production; however little information is available with respect to genetic characterization of cultivated bromeliads thus far. In the present study, a selection of cultivated bromeliads was characterized via inter-simple sequence repeat (ISSR) markers with an emphasis on genetic diversity and population structure. Twelve ISSR primers produced 342 bands, of which 287 (~84%) were polymorphic, with polymorphic bands per primer ranging from 17 to 34. The Jaccard's similarity ranged from 0.08 to 0.89 and averaged ~0.30 for the investigated bromeliads. The Bayesian-based approach, together with the un-weighted paired group method with arithmetic average (UPGMA)-based clustering and the principal coordinate analysis (PCoA), distinctly grouped the bromeliads from Neoregelia, Guzmania, and Vriesea into three separately clusters, well corresponding with their botanical classifications; whereas the bromeliads of Aechmea other than the recently selected hybrids were not well assigned to a cluster. Additionally, ISSR marker was proven efficient for the identification of hybrids and bud sports of cultivated bromeliads. The findings achieved herein will further our knowledge about the genetic variability within cultivated bromeliads and therefore facilitate breeding for new varieties of cultivated bromeliads in future as well.

摘要

凤梨科植物在花卉生产中具有重要的经济价值;然而,迄今为止,关于栽培凤梨科植物的遗传特征的信息却很少。在本研究中,通过简单重复序列区间(ISSR)标记对一系列栽培凤梨科植物进行了特征分析,重点是遗传多样性和种群结构。12条ISSR引物产生了342条带,其中287条(约84%)具有多态性,每条引物的多态性条带数在17至34条之间。所研究的凤梨科植物的杰卡德相似系数在0.08至0.89之间,平均约为0.30。基于贝叶斯方法,结合基于算术平均数的非加权配对组方法(UPGMA)聚类和主坐标分析(PCoA),将新蕊凤梨属、果子蔓属和丽穗凤梨属的凤梨科植物明显地分为三个独立的聚类,与它们的植物分类很好地对应;而除了最近选择的杂交种之外的彩叶凤梨属的凤梨科植物没有很好地归为一个聚类。此外,ISSR标记被证明对鉴定栽培凤梨科植物的杂交种和芽变有效。本文所取得的研究结果将进一步增进我们对栽培凤梨科植物遗传变异性的了解,因此也将有助于未来栽培凤梨科植物新品种的培育。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6b4/3382752/2cb051ac7915/ijms-13-06040f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6b4/3382752/e1ef6965c99e/ijms-13-06040f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6b4/3382752/2e26857a7bf6/ijms-13-06040f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6b4/3382752/ec3b62f14106/ijms-13-06040f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6b4/3382752/c1448193f0ef/ijms-13-06040f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6b4/3382752/2cb051ac7915/ijms-13-06040f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6b4/3382752/e1ef6965c99e/ijms-13-06040f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6b4/3382752/2e26857a7bf6/ijms-13-06040f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6b4/3382752/ec3b62f14106/ijms-13-06040f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6b4/3382752/c1448193f0ef/ijms-13-06040f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6b4/3382752/2cb051ac7915/ijms-13-06040f5.jpg

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