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回声定位蝙蝠的综合分类单元(IOTUs):分子分类学和传统分类学之间的桥梁。

Integrated operational taxonomic units (IOTUs) in echolocating bats: a bridge between molecular and traditional taxonomy.

机构信息

ZooPlantLab, Dipartimento di Biotecnologie e Bioscienze, Università degli Studi di Milano-Bicocca, Milano, Italy.

出版信息

PLoS One. 2012;7(6):e40122. doi: 10.1371/journal.pone.0040122. Epub 2012 Jun 28.

Abstract

BACKGROUND

Nowadays, molecular techniques are widespread tools for the identification of biological entities. However, until very few years ago, their application to taxonomy provoked intense debates between traditional and molecular taxonomists. To prevent every kind of disagreement, it is essential to standardize taxonomic definitions. Along these lines, we introduced the concept of Integrated Operational Taxonomic Unit (IOTU). IOTUs come from the concept of Operational Taxonomic Unit (OTU) and paralleled the Molecular Operational Taxonomic Unit (MOTU). The latter is largely used as a standard in many molecular-based works (even if not always explicitly formalized). However, while MOTUs are assigned solely on molecular variation criteria, IOTUs are identified from patterns of molecular variation that are supported by at least one more taxonomic characteristic.

METHODOLOGY/PRINCIPAL FINDINGS: We tested the use of IOTUs on the widest DNA barcoding dataset of Italian echolocating bats species ever assembled (i.e. 31 species, 209 samples). We identified 31 molecular entities, 26 of which corresponded to the morphologically assigned species, two MOTUs and three IOTUs. Interestingly, we found three IOTUs in Myotis nattereri, one of which is a newly described lineage found only in central and southern Italy. In addition, we found a level of molecular variability within four vespertilionid species deserving further analyses. According to our scheme two of them (i.e. M.bechsteinii and Plecotus auritus) should be ranked as unconfirmed candidate species (UCS).

CONCLUSIONS/SIGNIFICANCE: From a systematic point of view, IOTUs are more informative than the general concept of OTUs and the more recent MOTUs. According to information content, IOTUs are closer to species, although it is important to underline that IOTUs are not species. Overall, the use of a more precise panel of taxonomic entities increases the clarity in the systematic field and has the potential to fill the gaps between modern and traditional taxonomy.

摘要

背景

如今,分子技术已广泛应用于生物实体的鉴定。然而,直到几年前,它们在分类学中的应用在传统分类学家和分子分类学家之间引发了激烈的争论。为了防止任何分歧,标准化分类定义至关重要。沿着这些思路,我们引入了综合操作分类单元(IOTU)的概念。IOTU 源于操作分类单元(OTU)的概念,并与分子操作分类单元(MOTU)平行。后者在许多基于分子的工作中被广泛用作标准(即使并非总是明确形式化)。然而,虽然 MOTU 仅根据分子变异标准进行分配,但 IOTU 是根据至少一个以上的分类特征支持的分子变异模式来识别的。

方法/主要发现:我们在意大利回声定位蝙蝠物种最广泛的 DNA 条形码数据集上测试了 IOTU 的使用(即 31 个物种,209 个样本)。我们确定了 31 个分子实体,其中 26 个与形态学分配的物种相对应,2 个 MOTU 和 3 个 IOTU。有趣的是,我们在 Myotis nattereri 中发现了三个 IOTU,其中一个是仅在意大利中部和南部发现的新描述谱系。此外,我们发现了四个蝙蝠物种中的四个具有值得进一步分析的分子变异性水平。根据我们的方案,其中两个(即 M.bechsteinii 和 Plecotus auritus)应被列为未经证实的候选物种(UCS)。

结论/意义:从系统学的角度来看,IOTU 比一般的 OTU 概念和最近的 MOTU 更具信息性。根据信息量,IOTU 更接近物种,尽管重要的是要强调 IOTU 不是物种。总体而言,使用更精确的分类实体面板增加了系统学领域的清晰度,并有可能填补现代分类学和传统分类学之间的空白。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3cd/3386196/fcf61756720a/pone.0040122.g001.jpg

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