Graduate School of Information Science, Nagoya University, Nagoya 464-8601, Japan.
J Chem Phys. 2012 Jul 14;137(2):024501. doi: 10.1063/1.4732307.
An efficient methodology is presented to improve the QM description of solute-solvent interactions in condensed systems within the quantum mechanical/molecular mechanical (QM/MM) framework. It is based on the recently developed new treatment of the adaptive multiscale QM/MM-MD method, i.e., the number-adaptive multiscale method that includes the close solvent molecules around the solute into QM region and enables them to flow across the boundary between the QM and MM regions. We have applied it to zwitterionic (ZW) glycine molecule in aqueous solution, and investigated the hydration structures and charge distributions, which are compared with those by the standard (SD) method that only a solute glycine molecule is treated quantum mechanically. It is shown that the total energy and temperature are satisfactorily conserved, providing reasonable hydration numbers and induced polarization of ZW glycine molecule in aqueous solution. In contrast, the SD method is found overestimated the hydration numbers in comparison to the experimental ones due to the inappropriate expression of the electron distribution. In conclusion, the present method should become quite useful as the quantitative statistical sampling method to study various chemical phenomena in condensed systems.
本文提出了一种有效的方法,旨在提高量子力学/分子力学(QM/MM)框架内凝聚态系统中溶剂-溶质相互作用的 QM 描述。它基于最近开发的自适应多尺度 QM/MM-MD 方法的新处理方法,即数量自适应多尺度方法,该方法将溶质周围的近溶剂分子纳入 QM 区域,并允许它们在 QM 和 MM 区域之间流动。我们将其应用于两性离子(ZW)甘氨酸分子在水溶液中的情况,研究了水合结构和电荷分布,并与仅将甘氨酸分子量子力学处理的标准(SD)方法进行了比较。结果表明,总能量和温度得到了很好的守恒,提供了合理的水合数和水溶液中 ZW 甘氨酸分子的诱导极化。相比之下,由于电子分布的不适当表示,SD 方法被发现高估了水合数与实验值的比较。总之,本方法应该成为研究凝聚态系统中各种化学现象的定量统计采样方法非常有用。