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无规卷曲蛋白与其水合水分子的动力学耦合:与折叠可溶性蛋白和膜蛋白的比较。

Dynamical coupling of intrinsically disordered proteins and their hydration water: comparison with folded soluble and membrane proteins.

机构信息

Comissariat à l'Energie Atomique, Institut de Biologie Structurale, Grenoble, France.

出版信息

Biophys J. 2012 Jul 3;103(1):129-36. doi: 10.1016/j.bpj.2012.05.027.

Abstract

Hydration water is vital for various macromolecular biological activities, such as specific ligand recognition, enzyme activity, response to receptor binding, and energy transduction. Without hydration water, proteins would not fold correctly and would lack the conformational flexibility that animates their three-dimensional structures. Motions in globular, soluble proteins are thought to be governed to a certain extent by hydration-water dynamics, yet it is not known whether this relationship holds true for other protein classes in general and whether, in turn, the structural nature of a protein also influences water motions. Here, we provide insight into the coupling between hydration-water dynamics and atomic motions in intrinsically disordered proteins (IDP), a largely unexplored class of proteins that, in contrast to folded proteins, lack a well-defined three-dimensional structure. We investigated the human IDP tau, which is involved in the pathogenic processes accompanying Alzheimer disease. Combining neutron scattering and protein perdeuteration, we found similar atomic mean-square displacements over a large temperature range for the tau protein and its hydration water, indicating intimate coupling between them. This is in contrast to the behavior of folded proteins of similar molecular weight, such as the globular, soluble maltose-binding protein and the membrane protein bacteriorhodopsin, which display moderate to weak coupling, respectively. The extracted mean square displacements also reveal a greater motional flexibility of IDP compared with globular, folded proteins and more restricted water motions on the IDP surface. The results provide evidence that protein and hydration-water motions mutually affect and shape each other, and that there is a gradient of coupling across different protein classes that may play a functional role in macromolecular activity in a cellular context.

摘要

水合作用对于各种生物大分子的活性至关重要,例如特定配体识别、酶活性、受体结合响应和能量转导。如果没有水合作用,蛋白质就无法正确折叠,并且缺乏赋予其三维结构的构象灵活性。球状、可溶性蛋白质的运动被认为在一定程度上受到水合作用动力学的控制,但目前尚不清楚这种关系是否普遍适用于其他蛋白质类别,以及蛋白质的结构性质是否反过来也会影响水的运动。在这里,我们深入了解了水合作用动力学与无序蛋白质(IDP)中原子运动之间的耦合关系,无序蛋白质是一个尚未得到充分探索的蛋白质类别,与折叠蛋白质不同,它们缺乏明确的三维结构。我们研究了人类 IDP tau,它与阿尔茨海默病伴随的致病过程有关。通过结合中子散射和蛋白质氘代,我们发现 tau 蛋白及其水合水在很大的温度范围内具有相似的原子均方根位移,表明它们之间存在紧密的耦合关系。这与具有相似分子量的折叠蛋白质的行为形成对比,例如球状、可溶性麦芽糖结合蛋白和膜蛋白细菌视紫红质,它们分别显示出中等至弱的耦合。提取的均方根位移还表明,IDP 比球状折叠蛋白质具有更大的运动灵活性,并且 IDP 表面的水运动受到更多限制。这些结果提供了证据表明蛋白质和水合作用之间的运动相互影响和塑造彼此,并且在不同的蛋白质类别之间存在耦合梯度,这可能在细胞环境中的大分子活性中发挥功能作用。

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