Chemical & Engineering Materials Division, Neutron Sciences Directorate, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
Phys Chem Chem Phys. 2012 Sep 7;14(33):11573-88. doi: 10.1039/c2cp41443k. Epub 2012 Jul 24.
Both the structure and dynamics of biomolecules are known to be essential for their biological function. In the dehydrated state, the function of biomolecules, such as proteins, is severely impeded, so hydration is required for bioactivity. The dynamics of the hydrated biomolecules and their hydration water are related - but how closely? The problem involves several layers of complexity. Even for water in the bulk state, the contribution from various dynamic components to the overall dynamics is not fully understood. In biological systems, the effects of confinement on the hydration water further complicate the picture. Even if the various components of the hydration water dynamics are properly understood, which of them are coupled to the protein dynamics, and how? The studies of protein dynamics over the wide temperature range, from physiological to low temperatures, provide some answers to these question. At low temperatures, both the protein and its hydration water behave as solids, with only vibrational degrees of freedom. As the temperature is increased, non-vibrational dynamic components start contributing to the measurable dynamics and eventually become dominant at physiological temperatures. Thus, the temperature dependence of the dynamics of protein and its hydration water may allow probing various dynamic components separately. In order to suppress the water freezing, the low-temperature studies of protein rely on either low-hydrated samples (essentially, hydrated protein powders), or cryo-protective solutions. Both approaches introduce the hydration environments not characteristic of the protein environments in living systems, which are typically aqueous protein solutions of various concentrations. In this paper, we discuss the coupling between the dynamic components of the protein and its hydration water by critical examining of the existing literature, and then propose that proteins can be studied in an aqueous solution that is remarkably similar in its dynamic properties to pure water, yet does not freeze down to about 200 K, even in the bulk form. The first experiment of this kind using quasielastic neutron scattering is discussed, and more experiments are proposed.
生物分子的结构和动态都与其生物功能息息相关。在脱水状态下,生物分子(如蛋白质)的功能严重受阻,因此生物活性需要水合作用。水合生物分子及其水化水的动态是相关的——但它们的关联程度有多高?这个问题涉及到几个层次的复杂性。即使对于体相水中的情况,各种动态成分对整体动力学的贡献也不完全清楚。在生物系统中,受限效应对水化水的影响进一步使情况复杂化。即使水化水动力学的各个组成部分得到了适当的理解,它们中哪些与蛋白质动力学相关,以及如何相关?在从生理温度到低温的广泛温度范围内对蛋白质动力学的研究为这些问题提供了一些答案。在低温下,蛋白质及其水化水都表现为固体,只有振动自由度。随着温度的升高,非振动动态成分开始对可测量的动力学做出贡献,并最终在生理温度下变得占主导地位。因此,蛋白质及其水化水的动力学随温度的变化可以单独探测各种动态成分。为了抑制水的冻结,低温下对蛋白质的研究依赖于低水合样品(实质上是水合蛋白质粉末)或冷冻保护溶液。这两种方法引入的水合环境都不是活细胞体系中蛋白质环境的典型特征,这些体系通常是各种浓度的水相蛋白质溶液。在本文中,我们通过仔细检查现有文献,讨论了蛋白质的动态成分与其水化水之间的耦合关系,然后提出可以在一种水相中研究蛋白质,该水相在动力学性质上与纯水非常相似,但在大块形式下,其冰点不会降至约 200 K。讨论了第一个使用准弹性中子散射的此类实验,并提出了更多的实验建议。