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本文引用的文献

1
Reconciling molecular phylogenies with the fossil record.使分子系统发育与化石记录相协调。
Proc Natl Acad Sci U S A. 2011 Sep 27;108(39):16327-32. doi: 10.1073/pnas.1102543108. Epub 2011 Sep 19.
2
Population genetics, taxonomy, phylogeny and evolution of Borrelia burgdorferi sensu lato.伯氏疏螺旋体(Borrelia burgdorferi sensu lato)的种群遗传学、分类学、系统发育和进化。
Infect Genet Evol. 2011 Oct;11(7):1545-63. doi: 10.1016/j.meegid.2011.07.022. Epub 2011 Aug 5.
3
Biodiversity of Borrelia burgdorferi strains in tissues of Lyme disease patients.莱姆病患者组织中伯氏疏螺旋体菌株的多样性。
PLoS One. 2011;6(8):e22926. doi: 10.1371/journal.pone.0022926. Epub 2011 Aug 4.
4
Mammalian phylogeny reveals recent diversification rate shifts.哺乳动物系统发育揭示了近期的多样化速率转变。
Proc Natl Acad Sci U S A. 2011 Apr 12;108(15):6187-92. doi: 10.1073/pnas.1016876108. Epub 2011 Mar 28.
5
Testing for temporal variation in diversification rates when sampling is incomplete and nonrandom.检测抽样不完全和非随机时多样化率的时间变化。
Syst Biol. 2011 Jul;60(4):410-9. doi: 10.1093/sysbio/syr007. Epub 2011 Mar 4.
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Equilibrium speciation dynamics in a model adaptive radiation of island lizards.岛屿蜥蜴模型适应性辐射中的平衡物种形成动态。
Proc Natl Acad Sci U S A. 2010 Dec 21;107(51):22178-83. doi: 10.1073/pnas.1007606107. Epub 2010 Dec 6.
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Inferring the dynamics of diversification: a coalescent approach.推断多样化的动态:一种合并方法。
PLoS Biol. 2010 Sep 28;8(9):e1000493. doi: 10.1371/journal.pbio.1000493.
8
Interpreting the gamma statistic in phylogenetic diversification rate studies: a rate decrease does not necessarily indicate an early burst.在系统发育多样化率研究中解释伽玛统计量:率下降不一定表明早期爆发。
PLoS One. 2010 Jul 23;5(7):e11781. doi: 10.1371/journal.pone.0011781.
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Ecological opportunity and the origin of adaptive radiations.生态机会与适应性辐射的起源。
J Evol Biol. 2010 Aug;23(8):1581-96. doi: 10.1111/j.1420-9101.2010.02029.x. Epub 2010 Jun 17.
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Slowdowns in diversification rates from real phylogenies may not be real.真实系统发育树中多样化速率的减缓可能不是真实的。
Syst Biol. 2010 Jul;59(4):458-64. doi: 10.1093/sysbio/syq032. Epub 2010 Jun 3.

细菌种群的爆炸式辐射。

Explosive radiation of a bacterial species group.

机构信息

Center for Applied Mathematics, UMR 7641 CNRS, Ecole Polytechnique, 91128 Palaiseau, France.

出版信息

Evolution. 2012 Aug;66(8):2577-86. doi: 10.1111/j.1558-5646.2012.01598.x. Epub 2012 Mar 12.

DOI:10.1111/j.1558-5646.2012.01598.x
PMID:22834754
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3871994/
Abstract

The current diversity of life on earth is the product of macroevolutionary processes that have shaped the dynamics of diversification. Although the tempo of diversification has been studied extensively in macroorganisms, much less is known about the rates of diversification in the exceedingly diverse and species-rich microbiota. Decreases in diversification rates over time, a signature of explosive radiations, are commonly observed in plant and animal lineages. However, the few existing analyses of microbial lineages suggest that the tempo of diversification in prokaryotes may be fundamentally different. Here, we use multilocus and genomic sequence data to test hypotheses about the rate of diversification in a well-studied pathogenic bacterial lineage, Borrelia burgdorferi sensu lato (sl). Our analyses support the hypothesis that an explosive radiation of lineages occurred near the origin of the clade, followed by a sharp decay in diversification rates. These results suggest that explosive radiations may be a general feature of evolutionary history across the tree of life.

摘要

目前地球上生命的多样性是塑造多样化动态的宏观进化过程的产物。尽管宏观生物中广泛研究了多样化的节奏,但对于极其多样化和物种丰富的微生物群的多样化速度知之甚少。随着时间的推移,多样化率的下降是植物和动物谱系中爆发辐射的标志。然而,对微生物谱系的少数现有分析表明,原核生物多样化的节奏可能从根本上不同。在这里,我们使用多位点和基因组序列数据来检验关于研究得很好的致病性细菌谱系 Borrelia burgdorferi sensu lato (sl) 多样化率的假设。我们的分析支持这样的假设,即在进化枝的起源附近发生了谱系的爆发性辐射,随后多样化率急剧下降。这些结果表明,爆发性辐射可能是整个生命之树进化历史的普遍特征。