相似文献
1
zCall: a rare variant caller for array-based genotyping: genetics and population analysis.
Bioinformatics. 2012 Oct 1;28(19):2543-5. doi: 10.1093/bioinformatics/bts479. Epub 2012 Jul 27.
2
iCall: a genotype-calling algorithm for rare, low-frequency and common variants on the Illumina exome array.
Bioinformatics. 2014 Jun 15;30(12):1714-20. doi: 10.1093/bioinformatics/btu107. Epub 2014 Feb 23.
3
Best practices and joint calling of the HumanExome BeadChip: the CHARGE Consortium.
PLoS One. 2013 Jul 12;8(7):e68095. doi: 10.1371/journal.pone.0068095. Print 2013.
4
M(3): an improved SNP calling algorithm for Illumina BeadArray data.
Bioinformatics. 2012 Feb 1;28(3):358-65. doi: 10.1093/bioinformatics/btr673. Epub 2011 Dec 8.
5
ALCHEMY: a reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations.
Bioinformatics. 2010 Dec 1;26(23):2952-60. doi: 10.1093/bioinformatics/btq533. Epub 2010 Oct 5.
6
Using genotype array data to compare multi- and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data.
Bioinformatics. 2017 Apr 15;33(8):1147-1153. doi: 10.1093/bioinformatics/btw786.
7
A comparative analysis of algorithms for somatic SNV detection in cancer.
Bioinformatics. 2013 Sep 15;29(18):2223-30. doi: 10.1093/bioinformatics/btt375. Epub 2013 Jul 9.
8
Comparison of genotype clustering tools with rare variants.
BMC Bioinformatics. 2014 Feb 21;15:52. doi: 10.1186/1471-2105-15-52.
9
Fast genotyping of known SNPs through approximate k-mer matching.
Bioinformatics. 2016 Sep 1;32(17):i538-i544. doi: 10.1093/bioinformatics/btw460.
10
Practical Calling Approach for Exome Array-Based Genome-Wide Association Studies in Korean Population.
Int J Genomics. 2015;2015:421715. doi: 10.1155/2015/421715. Epub 2015 Dec 27.
引用本文的文献
1
Genome-wide association meta-analyses of drug-resistant epilepsy.
EBioMedicine. 2025 May;115:105675. doi: 10.1016/j.ebiom.2025.105675. Epub 2025 Apr 15.
2
HLA I immunopeptidome of synthetic long peptide pulsed human dendritic cells for therapeutic vaccine design.
NPJ Vaccines. 2025 Jan 18;10(1):12. doi: 10.1038/s41541-025-01069-1.
3
The DLEU2-miR-15a-16-1 Cluster Is a Determinant of Bone Microarchitecture and Strength in Postmenopausal Women and Mice.
Int J Mol Sci. 2024 Nov 27;25(23):12724. doi: 10.3390/ijms252312724.
4
Disentangling the heterogeneity of multiple sclerosis through identification of independent neuropathological dimensions.
Acta Neuropathol. 2024 May 21;147(1):90. doi: 10.1007/s00401-024-02742-w.
5
Prostate cancer genetic risk and associated aggressive disease in men of African ancestry.
Nat Commun. 2023 Dec 5;14(1):8037. doi: 10.1038/s41467-023-43726-w.
6
Decoding Genetics, Ancestry, and Geospatial Context for Precision Health.
medRxiv. 2023 Oct 25:2023.10.24.23297096. doi: 10.1101/2023.10.24.23297096.
7
Apolipoprotein-CIII -Glycosylation, a Link between and Plasma Lipids.
Int J Mol Sci. 2023 Oct 2;24(19):14844. doi: 10.3390/ijms241914844.
8
Mechanosensitive ion channel gene survey suggests potential roles in primary open angle glaucoma.
Sci Rep. 2023 Sep 23;13(1):15871. doi: 10.1038/s41598-023-43072-3.
9
Low-Cost High-Throughput Genotyping for Diagnosing Familial Hypercholesterolemia.
Circ Genom Precis Med. 2023 Oct;16(5):462-469. doi: 10.1161/CIRCGEN.123.004103. Epub 2023 Sep 7.
10
Depression pathophysiology, risk prediction of recurrence and comorbid psychiatric disorders using genome-wide analyses.
Nat Med. 2023 Jul;29(7):1832-1844. doi: 10.1038/s41591-023-02352-1. Epub 2023 Jul 18.
本文引用的文献
1
Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.
Mol Psychiatry. 2012 Sep;17(9):880-6. doi: 10.1038/mp.2012.73. Epub 2012 Jun 12.
2
optiCall: a robust genotype-calling algorithm for rare, low-frequency and common variants.
Bioinformatics. 2012 Jun 15;28(12):1598-603. doi: 10.1093/bioinformatics/bts180. Epub 2012 Apr 12.
3
Five years of GWAS discovery.
Am J Hum Genet. 2012 Jan 13;90(1):7-24. doi: 10.1016/j.ajhg.2011.11.029.
4
Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips.
BMC Bioinformatics. 2011 Mar 8;12:68. doi: 10.1186/1471-2105-12-68.
5
Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs.
Nat Genet. 2008 Oct;40(10):1253-60. doi: 10.1038/ng.237. Epub 2008 Sep 7.
6
Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease.
Nat Genet. 2003 Mar;33 Suppl:228-37. doi: 10.1038/ng1090.
Zotero 插件