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高通量细菌基因组测序:选择之多令人尴尬,机会之广蔚为大观。

High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity.

机构信息

Institute of Microbiology and Infection, University of Birmingham, Birmingham B15 2TT, UK.

出版信息

Nat Rev Microbiol. 2012 Sep;10(9):599-606. doi: 10.1038/nrmicro2850. Epub 2012 Aug 6.

DOI:10.1038/nrmicro2850
PMID:22864262
Abstract

Here, we take a snapshot of the high-throughput sequencing platforms, together with the relevant analytical tools, that are available to microbiologists in 2012, and evaluate the strengths and weaknesses of these platforms in obtaining bacterial genome sequences. We also scan the horizon of future possibilities, speculating on how the availability of sequencing that is 'too cheap to metre' might change the face of microbiology forever.

摘要

在这里,我们对 2012 年微生物学家可利用的高通量测序平台及其相关分析工具进行了概述,并评估了这些平台在获取细菌基因组序列方面的优缺点。我们还展望了未来的可能性,推测测序成本“低到无法计量”的可用性将如何永远改变微生物学的面貌。

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本文引用的文献

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Hybrid error correction and de novo assembly of single-molecule sequencing reads.单分子测序reads 的混合纠错与从头组装。
Nat Biotechnol. 2012 Jul 1;30(7):693-700. doi: 10.1038/nbt.2280.
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A hybrid approach for the automated finishing of bacterial genomes.一种用于细菌基因组自动完成的混合方法。
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Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak.应用全基因组快速测序调查新生儿耐甲氧西林金黄色葡萄球菌爆发疫情
基于第三代纳米孔测序数据构建病原微生物检测方法
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Establishing genetic manipulation for novel strains of human gut bacteria.建立新型人类肠道细菌菌株的基因操作方法。
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Label-free single-particle imaging approach for ultra-rapid detection of pathogenic bacteria in clinical samples.无标记单颗粒成像方法用于临床样本中超快速检测致病菌。
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Combination of Whole Genome Sequencing and Metagenomics for Microbiological Diagnostics.全基因组测序与宏基因组学在微生物诊断中的联合应用。
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Anthropogenic Intensity-Determined Assembly and Network Stability of Bacterioplankton Communities in the Le'an River.乐安河浮游细菌群落的人为强度决定的组装与网络稳定性
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The automatic annotation of bacterial genomes.细菌基因组的自动注释。
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