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本文引用的文献

1
Magnetococcus marinus gen. nov., sp. nov., a marine, magnetotactic bacterium that represents a novel lineage (Magnetococcaceae fam. nov., Magnetococcales ord. nov.) at the base of the Alphaproteobacteria.海洋趋磁细菌 Marinococcus marinus 属,新种,是一种新的谱系(新科 Magnetococcaceae,新目 Magnetococcales)的海洋趋磁细菌,位于α-变形菌纲的底部。
Int J Syst Evol Microbiol. 2013 Mar;63(Pt 3):801-808. doi: 10.1099/ijs.0.038927-0. Epub 2012 May 11.
2
A cultured greigite-producing magnetotactic bacterium in a novel group of sulfate-reducing bacteria.一种新型硫酸盐还原菌中产磁黄铁矿的培养磁细菌。
Science. 2011 Dec 23;334(6063):1720-3. doi: 10.1126/science.1212596.
3
Magnetospira thiophila gen. nov., sp. nov., a marine magnetotactic bacterium that represents a novel lineage within the Rhodospirillaceae (Alphaproteobacteria).硫发菌属(Magnetospira)新属,新种,一种海洋趋磁细菌,代表红螺菌科(α-变形菌)中的一个新谱系。
Int J Syst Evol Microbiol. 2012 Oct;62(Pt 10):2443-2450. doi: 10.1099/ijs.0.037697-0. Epub 2011 Nov 25.
4
Molecular mechanisms of compartmentalization and biomineralization in magnetotactic bacteria.趋磁细菌中分隔和生物矿化的分子机制。
FEMS Microbiol Rev. 2012 Jan;36(1):232-55. doi: 10.1111/j.1574-6976.2011.00315.x.
5
Functional analysis of the magnetosome island in Magnetospirillum gryphiswaldense: the mamAB operon is sufficient for magnetite biomineralization.格氏嗜甲基菌中磁小体岛的功能分析:mamAB 操纵子足以进行磁铁矿生物矿化。
PLoS One. 2011;6(10):e25561. doi: 10.1371/journal.pone.0025561. Epub 2011 Oct 17.
6
Novel magnetite-producing magnetotactic bacteria belonging to the Gammaproteobacteria.新型产磁铁矿趋磁细菌属于γ-变形菌纲。
ISME J. 2012 Feb;6(2):440-50. doi: 10.1038/ismej.2011.97. Epub 2011 Jul 21.
7
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.MEGA5:用于最大似然法、进化距离法和最大简约法的分子进化遗传学分析。
Mol Biol Evol. 2011 Oct;28(10):2731-9. doi: 10.1093/molbev/msr121. Epub 2011 May 4.
8
Common ancestry of iron oxide- and iron-sulfide-based biomineralization in magnetotactic bacteria.趋磁细菌中铁氧化物和硫化物生物矿化的共同起源。
ISME J. 2011 Oct;5(10):1634-40. doi: 10.1038/ismej.2011.35. Epub 2011 Apr 21.
9
Conservation of proteobacterial magnetosome genes and structures in an uncultivated member of the deep-branching Nitrospira phylum.在深分枝硝化螺旋菌门的一个未培养成员中保护细菌磁铁矿基因和结构。
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1134-9. doi: 10.1073/pnas.1012694108. Epub 2010 Dec 29.
10
Magnetospirillum bellicus sp. nov., a novel dissimilatory perchlorate-reducing alphaproteobacterium isolated from a bioelectrical reactor.贝氏磁螺菌,一种新型的异化高氯酸盐还原的α-变形菌,从生物电化学反应堆中分离得到。
Appl Environ Microbiol. 2010 Jul;76(14):4730-7. doi: 10.1128/AEM.00015-10. Epub 2010 May 21.

基于 mam 基因系统发育分析揭示趋磁螺菌属 Magnetospirillum spp. 中趋磁行为的进化

Insight into the evolution of magnetotaxis in Magnetospirillum spp., based on mam gene phylogeny.

机构信息

CEA Cadarache/CNRS/Université Aix-Marseille, UMR7265 Service de Biologie Végétale et de Microbiologie Environnementale, Laboratoire de Bioénergétique Cellulaire, Saint Paul lez Durance, France.

出版信息

Appl Environ Microbiol. 2012 Oct;78(20):7238-48. doi: 10.1128/AEM.01951-12. Epub 2012 Aug 3.

DOI:10.1128/AEM.01951-12
PMID:22865076
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3457087/
Abstract

Vibrioid- to helical-shaped magnetotactic bacteria phylogenetically related to the genus Magnetospirillum were isolated in axenic cultures from a number of freshwater and brackish environments located in the southwestern United States. Based on 16S rRNA gene sequences, most of the new isolates represent new Magnetospirillum species or new strains of known Magnetospirillum species, while one isolate appears to represent a new genus basal to Magnetospirillum. Partial sequences of conserved mam genes, genes reported to be involved in the magnetosome and magnetosome chain formation, and form II of the ribulose-1,5-bisphosphate carboxylase/oxygenase gene (cbbM) were determined in the new isolates and compared. The cbbM gene was chosen for comparison because it is not involved in magnetosome synthesis; it is highly conserved and is present in all but possibly one of the genomes of the magnetospirilla and the new isolates. Phylogenies based on 16S rRNA, cbbM, and mam gene sequences were reasonably congruent, indicating that the genes involved in magnetotaxis were acquired by a common ancestor of the Magnetospirillum clade. However, in one case, magnetosome genes might have been acquired through horizontal gene transfer. Our results also extend the known diversity of the Magnetospirillum group and show that they are widespread in freshwater environments.

摘要

从美国西南部的多个淡水和微咸水环境中,在无菌培养物中分离到与磁螺旋菌属亲缘关系密切的杆状到螺旋形趋磁细菌。基于 16S rRNA 基因序列,大多数新分离株代表了新的磁螺旋菌种或已知磁螺旋菌种的新菌株,而一个分离株似乎代表了磁螺旋菌的一个基础新属。在新分离株中测定了保守的 mam 基因、报道与磁小体和磁小体链形成有关的基因以及核酮糖-1,5-二磷酸羧化酶/加氧酶基因的 II 型(cbbM)的部分序列,并进行了比较。选择 cbbM 基因进行比较是因为它不参与磁小体合成;它高度保守,存在于除可能一个磁螺旋菌和新分离株的基因组之外的所有基因组中。基于 16S rRNA、cbbM 和 mam 基因序列的系统发育分析结果相当一致,表明参与趋磁作用的基因是由磁螺旋菌分支的共同祖先获得的。然而,在一种情况下,磁小体基因可能是通过水平基因转移获得的。我们的结果还扩展了已知的磁螺旋菌组的多样性,并表明它们广泛存在于淡水环境中。