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基于 mam 基因系统发育分析揭示趋磁螺菌属 Magnetospirillum spp. 中趋磁行为的进化

Insight into the evolution of magnetotaxis in Magnetospirillum spp., based on mam gene phylogeny.

机构信息

CEA Cadarache/CNRS/Université Aix-Marseille, UMR7265 Service de Biologie Végétale et de Microbiologie Environnementale, Laboratoire de Bioénergétique Cellulaire, Saint Paul lez Durance, France.

出版信息

Appl Environ Microbiol. 2012 Oct;78(20):7238-48. doi: 10.1128/AEM.01951-12. Epub 2012 Aug 3.

Abstract

Vibrioid- to helical-shaped magnetotactic bacteria phylogenetically related to the genus Magnetospirillum were isolated in axenic cultures from a number of freshwater and brackish environments located in the southwestern United States. Based on 16S rRNA gene sequences, most of the new isolates represent new Magnetospirillum species or new strains of known Magnetospirillum species, while one isolate appears to represent a new genus basal to Magnetospirillum. Partial sequences of conserved mam genes, genes reported to be involved in the magnetosome and magnetosome chain formation, and form II of the ribulose-1,5-bisphosphate carboxylase/oxygenase gene (cbbM) were determined in the new isolates and compared. The cbbM gene was chosen for comparison because it is not involved in magnetosome synthesis; it is highly conserved and is present in all but possibly one of the genomes of the magnetospirilla and the new isolates. Phylogenies based on 16S rRNA, cbbM, and mam gene sequences were reasonably congruent, indicating that the genes involved in magnetotaxis were acquired by a common ancestor of the Magnetospirillum clade. However, in one case, magnetosome genes might have been acquired through horizontal gene transfer. Our results also extend the known diversity of the Magnetospirillum group and show that they are widespread in freshwater environments.

摘要

从美国西南部的多个淡水和微咸水环境中,在无菌培养物中分离到与磁螺旋菌属亲缘关系密切的杆状到螺旋形趋磁细菌。基于 16S rRNA 基因序列,大多数新分离株代表了新的磁螺旋菌种或已知磁螺旋菌种的新菌株,而一个分离株似乎代表了磁螺旋菌的一个基础新属。在新分离株中测定了保守的 mam 基因、报道与磁小体和磁小体链形成有关的基因以及核酮糖-1,5-二磷酸羧化酶/加氧酶基因的 II 型(cbbM)的部分序列,并进行了比较。选择 cbbM 基因进行比较是因为它不参与磁小体合成;它高度保守,存在于除可能一个磁螺旋菌和新分离株的基因组之外的所有基因组中。基于 16S rRNA、cbbM 和 mam 基因序列的系统发育分析结果相当一致,表明参与趋磁作用的基因是由磁螺旋菌分支的共同祖先获得的。然而,在一种情况下,磁小体基因可能是通过水平基因转移获得的。我们的结果还扩展了已知的磁螺旋菌组的多样性,并表明它们广泛存在于淡水环境中。

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