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提高 β-发夹形成的速度限制。

Raising the speed limit for β-hairpin formation.

机构信息

Department of Chemistry, Emory University, Atlanta, Georgia 30322, USA.

出版信息

J Am Chem Soc. 2012 Sep 5;134(35):14476-82. doi: 10.1021/ja3046734. Epub 2012 Aug 21.

Abstract

Understanding the folding of the β-hairpin is a crucial step in studying how β-rich proteins fold. We have studied CLN025, an optimized ten residue synthetic peptide, which adopts a compact, well-structured β-hairpin conformation. Formation of the component β-sheet and β-turn structures of CLN025 was probed independently using a combination of equilibrium Fourier transform infrared spectroscopy and laser-induced temperature jump coupled with time-resolved infrared and fluorescence spectroscopies. We find that CLN025 is an ultrafast folder due to its small free energy barrier to folding and that it exceeds the predicted speed limit for β-hairpin formation by an order of magnitude. We also find that the folding mechanism cannot be described by a simple two-state model, but rather is a heterogeneous process involving two independent parallel processes. Formation of stabilizing cross-strand hydrophobic interactions and turn alignment occur competitively, with relaxation lifetimes of 82 ± 10 and 124 ± 10 ns, respectively, at the highest probed temperature. The ultrafast and heterogeneous folding kinetics observed for CLN025 provide evidence for folding on a nearly barrierless free energy landscape, and recalibrate the speed limit for the formation of a β-hairpin.

摘要

理解β发夹的折叠是研究富含β的蛋白质如何折叠的关键步骤。我们研究了 CLN025,这是一种优化的十残基合成肽,它采用了紧凑、结构良好的β发夹构象。我们使用平衡傅里叶变换红外光谱和激光诱导温度跃变结合时间分辨红外和荧光光谱学的组合,独立探测了 CLN025 的组成β-折叠和β-转角结构的形成。我们发现 CLN025 是一种超快折叠体,因为它的折叠自由能势垒很小,并且它的折叠速度超过了β发夹形成的预测速度极限一个数量级。我们还发现,折叠机制不能用简单的两态模型来描述,而是一个涉及两个独立平行过程的非均相过程。稳定的跨链疏水相互作用和转角排列的形成是竞争的,在最高探测温度下,松弛寿命分别为 82±10 和 124±10 ns。CLN025 观察到的超快和非均相折叠动力学为几乎无势垒的自由能景观上的折叠提供了证据,并重新校准了β发夹形成的速度极限。

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Raising the speed limit for β-hairpin formation.提高 β-发夹形成的速度限制。
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本文引用的文献

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How fast-folding proteins fold.快速折叠蛋白如何折叠。
Science. 2011 Oct 28;334(6055):517-20. doi: 10.1126/science.1208351.
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Crystal structure of a ten-amino acid protein.一种十氨基酸蛋白质的晶体结构。
J Am Chem Soc. 2008 Nov 19;130(46):15327-31. doi: 10.1021/ja8030533. Epub 2008 Oct 25.
8
Ultrafast and downhill protein folding.超快且呈下坡式的蛋白质折叠
Curr Opin Struct Biol. 2007 Feb;17(1):38-47. doi: 10.1016/j.sbi.2007.01.001. Epub 2007 Jan 12.

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