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溶菌酶在疏水表面吸附/解吸的分子动力学模拟。

Molecular dynamics simulation of lysozyme adsorption/desorption on hydrophobic surfaces.

机构信息

Department of Biomedical Engineering, Department of Chemistry and Chemistry of Life Processes Institute, Northwestern University , Evanston, Illinois 60208, United States.

出版信息

J Phys Chem B. 2012 Aug 30;116(34):10189-94. doi: 10.1021/jp304057e. Epub 2012 Aug 21.

Abstract

In this work, we present a series of fully atomistic molecular dynamics (MD) simulations to study lysozyme's orientation-dependent adsorption on polyethylene (PE) surface in explicit water. The simulations show that depending on the orientation of the initial approach to the surface the protein may adsorb or bounce from the surface. The protein may completely leave the surface or reorient and approach the surface resulting in adsorption. The success of the trajectory to adsorb on the surface is the result of different competing interactions, including protein-surface interactions and the hydration of the protein and the hydrophobic PE surface. The difference in the hydration of various protein sites affects the protein's orientation-dependent behavior. Side-on orientation is most likely to result in adsorption as the protein-surface exhibits the strongest attraction. However, adsorption can also happen when lysozyme's longest axis is tilted on the surface if the protein-surface interaction is large enough to overcome the energy barrier that results from dehydrating both the protein and the surface. Our study demonstrates the significant role of dehydration process on hydrophobic surface during protein adsorption.

摘要

在这项工作中,我们进行了一系列全原子分子动力学(MD)模拟,以研究溶菌酶在明水中对聚乙烯(PE)表面的取向依赖吸附。模拟表明,取决于初始接近表面的取向,蛋白质可能会吸附在表面上或从表面反弹。蛋白质可能会完全离开表面,或者重新定向并接近表面,从而导致吸附。轨迹成功吸附在表面上是由于不同的竞争相互作用的结果,包括蛋白质-表面相互作用以及蛋白质和疏水性 PE 表面的水合作用。不同蛋白质部位水合作用的差异会影响蛋白质的取向依赖行为。侧向取向最有可能导致吸附,因为蛋白质-表面表现出最强的吸引力。然而,如果蛋白质-表面相互作用足够大,可以克服使蛋白质和表面脱水的能量障碍,那么当溶菌酶的最长轴在表面上倾斜时,吸附也可能发生。我们的研究表明,在蛋白质吸附过程中,脱水过程对疏水性表面起着重要作用。

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