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化学生物信息学和化学基因组学:计算机方法的潜在应用。

Chemoinformatics and chemical genomics: potential utility of in silico methods.

机构信息

Science and Research Staff, Office of Pharmaceutical Science, Center for Drug Evaluation and Research, US Food and Drug Administration, White Oak 51, Room 4128, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA.

出版信息

J Appl Toxicol. 2012 Nov;32(11):880-9. doi: 10.1002/jat.2804. Epub 2012 Aug 10.

Abstract

Computational life sciences and informatics are inseparably intertwined and they lie at the heart of modern biology, predictive quantitative modeling and high-performance computing. Two of the applied biological disciplines that are poised to benefit from such progress are pharmacology and toxicology. This review will describe in silico chemoinformatics methods such as (quantitative) structure-activity relationship modeling and will overview how chemoinformatic technologies are considered in applied regulatory research. Given the post-genomics era and large-scale repositories of omics data that are available, this review will also address potential applications of in silico techniques in chemical genomics. Chemical genomics utilizes small molecules to explore the complex biological phenomena that may not be not amenable to straightforward genetic approach. The reader will gain the understanding that chemoinformatics stands at the interface of chemistry and biology with enabling systems for mapping, statistical modeling, pattern recognition, imaging and database tools. The great potential of these technologies to help address complex issues in the toxicological sciences is appreciated with the applied goal of the protection of public health.

摘要

计算生命科学和信息学是密不可分的,它们是现代生物学、预测定量建模和高性能计算的核心。两个准备从这一进展中受益的应用生物学学科是药理学和毒理学。这篇综述将描述计算化学信息学方法,如(定量)结构-活性关系建模,并将概述化学信息学技术在应用监管研究中的应用。考虑到后基因组时代和大规模的组学数据存储库,这篇综述还将讨论计算技术在化学基因组学中的潜在应用。化学基因组学利用小分子来探索复杂的生物学现象,这些现象可能不适用于直接的遗传方法。读者将了解到化学信息学处于化学和生物学的交叉点,为映射、统计建模、模式识别、成像和数据库工具提供支持系统。这些技术具有很大的潜力,可以帮助解决毒理学科学中的复杂问题,应用目标是保护公众健康。

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