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假鞘氨醇杆菌属,新属. 新种,从海水分离的黄杆菌科多糖降解菌,修订黄杆菌属描述。

Pseudofulvibacter geojedonensis gen. nov., sp. nov., a polysaccharide-degrading member of the family Flavobacteriaceae isolated from seawater, and emended description of the genus Fulvibacter.

机构信息

Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon, Republic of Korea.

University of Science and Technology (UST), 113 Gwahangno, Yuseong, Daejeon, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2013 May;63(Pt 5):1696-1701. doi: 10.1099/ijs.0.043513-0. Epub 2012 Aug 17.

DOI:10.1099/ijs.0.043513-0
PMID:22904231
Abstract

A Gram-negative, non-spore-forming, aerobic, non-flagellated, non-gliding rod, designated YCS-9(T), was isolated from seawater in the South Sea, South Korea. Strain YCS-9(T) grew optimally at 25 °C, at pH 7.0-8.0 and in the presence of 2 % (w/v) NaCl. In the neighbour-joining phylogenetic tree based on 16S rRNA gene sequences, strain YCS-9(T) fell within the family Flavobacteriaceae and formed a cluster with Fulvibacter tottoriensis MTT-39(T) with a bootstrap resampling value of 75.4 %. Strain YCS-9(T) showed 92.3 % 16S rRNA gene sequence similarity to F. tottoriensis MTT-39(T) and 89.0-93.7 % sequence similarity to the other strains used in the phylogenetic analysis. Strain YCS-9(T) contained MK-6 as the only menaquinone and iso-C15 : 1 G, iso-C15 : 0 and iso-C17 : 0 3-OH as the major fatty acids. The major polar lipids were one unidentified lipid and one unidentified aminolipid. The DNA G+C content was 34.2 mol%. Strain YCS-9(T) could be differentiated from F. tottoriensis NBRC 102624(T) by differences in fatty acid composition, polar lipid profile and some phenotypic properties. On the basis of phenotypic, chemotaxonomic and phylogenetic data, strain YCS-9(T) represents a novel species in a new genus within the phylum Bacteroidetes, for which the name Pseudofulvibacter geojedonensis gen. nov., sp. nov. is proposed. The type strain of Pseudofulvibacter geojedonensis is YCS-9(T) ( = KCTC 23884(T)  = CCUG 62114(T)). An emended description of the genus Fulvibacter is also presented.

摘要

一株革兰氏阴性、非孢子形成、需氧、无鞭毛、不滑行的杆状菌,命名为 YCS-9(T),从韩国南海的海水中分离得到。菌株 YCS-9(T) 在 25°C、pH7.0-8.0 和 2%(w/v)NaCl 的条件下生长最佳。在基于 16S rRNA 基因序列的邻接法系统发育树中,菌株 YCS-9(T) 属于黄杆菌科,与富氏硫菌 MTT-39(T) 形成一个聚类,聚类的自举值为 75.4%。菌株 YCS-9(T)与 F. tottoriensis MTT-39(T) 的 16S rRNA 基因序列相似性为 92.3%,与系统发育分析中使用的其他菌株的序列相似性为 89.0-93.7%。菌株 YCS-9(T) 含有 MK-6 作为唯一的menaquinone,以及 iso-C15:1 G、iso-C15:0 和 iso-C17:0 3-OH 作为主要脂肪酸。主要的极性脂质是一种未鉴定的脂质和一种未鉴定的氨基脂质。DNA G+C 含量为 34.2mol%。菌株 YCS-9(T) 可通过脂肪酸组成、极性脂谱和一些表型特性与 F. tottoriensis NBRC 102624(T) 区分开来。基于表型、化学分类和系统发育数据,菌株 YCS-9(T) 代表了厚壁菌门黄杆菌科的一个新属中的一个新种,命名为假腐硫菌属 geojedonensis 属。假腐硫菌属 geojedonensis 的模式株为 YCS-9(T)(=KCTC 23884(T)=CCUG 62114(T))。还提出了黄杆菌属的修订描述。

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