Department of Chemistry, Princeton University, Princeton, NJ 08544, USA.
Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):14791-5. doi: 10.1073/pnas.1208121109. Epub 2012 Aug 24.
Van der Waals (vdW) interactions are ubiquitous in molecules and condensed matter, and play a crucial role in determining the structure, stability, and function for a wide variety of systems. The accurate prediction of these interactions from first principles is a substantial challenge because they are inherently quantum mechanical phenomena that arise from correlations between many electrons within a given molecular system. We introduce an efficient method that accurately describes the nonadditive many-body vdW energy contributions arising from interactions that cannot be modeled by an effective pairwise approach, and demonstrate that such contributions can significantly exceed the energy of thermal fluctuations--a critical accuracy threshold highly coveted during molecular simulations--in the prediction of several relevant properties. Cases studied include the binding affinity of ellipticine, a DNA-intercalating anticancer agent, the relative energetics between the A- and B-conformations of DNA, and the thermodynamic stability among competing paracetamol molecular crystal polymorphs. Our findings suggest that inclusion of the many-body vdW energy is essential for achieving chemical accuracy and therefore must be accounted for in molecular simulations.
范德华 (vdW) 相互作用在分子和凝聚态物质中无处不在,对各种系统的结构、稳定性和功能起着至关重要的作用。从第一性原理准确预测这些相互作用是一个巨大的挑战,因为它们本质上是量子力学现象,源于给定分子系统中许多电子之间的相关性。我们引入了一种高效的方法,可以准确描述不能用有效对相互作用模型描述的多体非加和 vdW 能量贡献,并证明这些贡献可以在预测几个相关性质时显著超过热涨落的能量——这是分子模拟中非常需要的一个关键精度阈值。所研究的案例包括椭圆碱,一种 DNA 嵌入抗癌剂的结合亲和力、DNA 的 A-和 B-构象之间的相对能量以及竞争对乙酰氨基酚分子晶体多晶型体之间的热力学稳定性。我们的研究结果表明,包含多体 vdW 能量对于实现化学精度是必不可少的,因此在分子模拟中必须考虑到这一点。