Suppr超能文献

分子体系中的集体多体范德华相互作用。

Collective many-body van der Waals interactions in molecular systems.

机构信息

Department of Chemistry, Princeton University, Princeton, NJ 08544, USA.

出版信息

Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):14791-5. doi: 10.1073/pnas.1208121109. Epub 2012 Aug 24.

Abstract

Van der Waals (vdW) interactions are ubiquitous in molecules and condensed matter, and play a crucial role in determining the structure, stability, and function for a wide variety of systems. The accurate prediction of these interactions from first principles is a substantial challenge because they are inherently quantum mechanical phenomena that arise from correlations between many electrons within a given molecular system. We introduce an efficient method that accurately describes the nonadditive many-body vdW energy contributions arising from interactions that cannot be modeled by an effective pairwise approach, and demonstrate that such contributions can significantly exceed the energy of thermal fluctuations--a critical accuracy threshold highly coveted during molecular simulations--in the prediction of several relevant properties. Cases studied include the binding affinity of ellipticine, a DNA-intercalating anticancer agent, the relative energetics between the A- and B-conformations of DNA, and the thermodynamic stability among competing paracetamol molecular crystal polymorphs. Our findings suggest that inclusion of the many-body vdW energy is essential for achieving chemical accuracy and therefore must be accounted for in molecular simulations.

摘要

范德华 (vdW) 相互作用在分子和凝聚态物质中无处不在,对各种系统的结构、稳定性和功能起着至关重要的作用。从第一性原理准确预测这些相互作用是一个巨大的挑战,因为它们本质上是量子力学现象,源于给定分子系统中许多电子之间的相关性。我们引入了一种高效的方法,可以准确描述不能用有效对相互作用模型描述的多体非加和 vdW 能量贡献,并证明这些贡献可以在预测几个相关性质时显著超过热涨落的能量——这是分子模拟中非常需要的一个关键精度阈值。所研究的案例包括椭圆碱,一种 DNA 嵌入抗癌剂的结合亲和力、DNA 的 A-和 B-构象之间的相对能量以及竞争对乙酰氨基酚分子晶体多晶型体之间的热力学稳定性。我们的研究结果表明,包含多体 vdW 能量对于实现化学精度是必不可少的,因此在分子模拟中必须考虑到这一点。

相似文献

1
Collective many-body van der Waals interactions in molecular systems.分子体系中的集体多体范德华相互作用。
Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):14791-5. doi: 10.1073/pnas.1208121109. Epub 2012 Aug 24.
2
Many-body van der Waals interactions in molecules and condensed matter.分子与凝聚态物质中的多体范德华相互作用。
J Phys Condens Matter. 2014 May 28;26(21):213202. doi: 10.1088/0953-8984/26/21/213202. Epub 2014 May 8.

引用本文的文献

6
Are octahedral clusters missing on the carbon energy landscape?碳能量景观上是否缺少八面体簇?
Nanoscale Adv. 2018 Sep 11;1(1):89-93. doi: 10.1039/c8na00013a. eCollection 2019 Jan 15.
8
Design Principles for Metastable Standing Molecules.亚稳态稳定分子的设计原则
J Phys Chem C Nanomater Interfaces. 2022 Apr 21;126(15):6880-6891. doi: 10.1021/acs.jpcc.2c01514. Epub 2022 Apr 7.

本文引用的文献

1
Accurate and efficient method for many-body van der Waals interactions.多体范德华相互作用的精确高效方法。
Phys Rev Lett. 2012 Jun 8;108(23):236402. doi: 10.1103/PhysRevLett.108.236402. Epub 2012 Jun 7.
3
Dispersion interaction in hydrogen-chain models.氢键模型中的弥散相互作用。
J Chem Phys. 2011 Mar 21;134(11):114106. doi: 10.1063/1.3563596.
8
Current status of the AMOEBA polarizable force field.AMOEBA 极化力场的现状。
J Phys Chem B. 2010 Mar 4;114(8):2549-64. doi: 10.1021/jp910674d.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验