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近年来内含肽研究进展:从机制到定向进化及应用。

Recent progress in intein research: from mechanism to directed evolution and applications.

机构信息

Institute of Biochemistry, University of Münster, Wilhelm-Klemm-Str. 2, 48149, Münster, Germany.

出版信息

Cell Mol Life Sci. 2013 Apr;70(7):1185-206. doi: 10.1007/s00018-012-1120-4. Epub 2012 Aug 28.

DOI:10.1007/s00018-012-1120-4
PMID:22926412
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11113529/
Abstract

Inteins catalyze a post-translational modification known as protein splicing, where the intein removes itself from a precursor protein and concomitantly ligates the flanking protein sequences with a peptide bond. Over the past two decades, inteins have risen from a peculiarity to a rich source of applications in biotechnology, biomedicine, and protein chemistry. In this review, we focus on developments of intein-related research spanning the last 5 years, including the three different splicing mechanisms and their molecular underpinnings, the directed evolution of inteins towards improved splicing in exogenous protein contexts, as well as novel applications of inteins for cell biology and protein engineering, which were made possible by a clearer understanding of the protein splicing mechanism.

摘要

内含子催化一种称为蛋白质剪接的翻译后修饰过程,其中内含子从前体蛋白中切除自身,并同时通过肽键连接侧翼的蛋白质序列。在过去的二十年中,内含子已经从一个奇特的现象变成了生物技术、生物医学和蛋白质化学中丰富的应用来源。在这篇综述中,我们重点介绍了过去 5 年内与内含子相关的研究进展,包括三种不同的剪接机制及其分子基础、内含子的定向进化以改善外源蛋白环境中的剪接效率,以及通过更清楚地了解蛋白质剪接机制而实现的内含子在细胞生物学和蛋白质工程中的新应用。

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1
Recent progress in intein research: from mechanism to directed evolution and applications.近年来内含肽研究进展:从机制到定向进化及应用。
Cell Mol Life Sci. 2013 Apr;70(7):1185-206. doi: 10.1007/s00018-012-1120-4. Epub 2012 Aug 28.
2
[Protein splicing and its application].[蛋白质剪接及其应用]
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Inteins as Drug Targets and Therapeutic Tools.内含肽作为药物靶点和治疗工具。
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本文引用的文献

1
Protein trans-splicing as a protein ligation tool to study protein structure and function.蛋白质反式剪接作为一种蛋白质连接工具用于研究蛋白质结构与功能。
Biomol Concepts. 2011 Jun 1;2(3):183-98. doi: 10.1515/bmc.2011.014.
2
Split Inteins: Nature's Protein Ligases.分裂内含肽:自然界的蛋白质连接酶。
Isr J Chem. 2011 Nov 1;51(8-9):854-861. doi: 10.1002/ijch.201100094.
3
Ultrafast protein splicing is common among cyanobacterial split inteins: implications for protein engineering.超快蛋白质剪接在蓝藻分裂整合酶中很常见:对蛋白质工程的启示。
J Am Chem Soc. 2012 Jul 18;134(28):11338-41. doi: 10.1021/ja303226x. Epub 2012 Jul 2.
4
NMR and crystal structures of the Pyrococcus horikoshii RadA intein guide a strategy for engineering a highly efficient and promiscuous intein.Pyrococcus horikoshii RadA 内含肽的 NMR 和晶体结构为设计高效广谱内含肽提供了策略。
J Mol Biol. 2012 Aug 3;421(1):85-99. doi: 10.1016/j.jmb.2012.04.029. Epub 2012 May 2.
5
In-cell fluorescence activation and labeling of proteins mediated by FRET-quenched split inteins.通过 FRET 猝灭分裂整合酶对细胞内蛋白质进行荧光激活和标记。
J Am Chem Soc. 2012 Apr 11;134(14):6344-53. doi: 10.1021/ja300209u. Epub 2012 Mar 28.
6
The Thermococcus kodakaraensis Tko CDC21-1 intein activates its N-terminal splice junction in the absence of a conserved histidine by a compensatory mechanism.日本海栖热袍菌 TkoCDC21-1 内含肽在没有保守组氨酸的情况下通过补偿机制激活其 N 端剪接连接点。
Biochemistry. 2012 Mar 27;51(12):2496-505. doi: 10.1021/bi201840k. Epub 2012 Mar 13.
7
Probing intein-catalyzed thioester formation by unnatural amino acid substitutions in the active site.在活性位点用非天然氨基酸取代探测内含肽催化的硫酯形成。
Biochemistry. 2012 Jan 10;51(1):233-42. doi: 10.1021/bi2014823. Epub 2011 Dec 28.
8
Split-intein mediated re-assembly of genetically encoded Ca(2+) indicators.分裂内含肽介导的基因编码 Ca(2+)指示剂的重新组装。
Cell Calcium. 2012 Jan;51(1):57-64. doi: 10.1016/j.ceca.2011.10.006. Epub 2011 Nov 30.
9
Branched intermediate formation is the slowest step in the protein splicing reaction of the Ala1 KlbA intein from Methanococcus jannaschii.分支中间体的形成是产甲烷球菌 Ala1 KlbA 内含肽蛋白剪接反应中最慢的步骤。
Biochemistry. 2011 Dec 13;50(49):10576-89. doi: 10.1021/bi200810j. Epub 2011 Nov 16.
10
Evaluation and comparison of protein splicing by exogenous inteins with foreign exteins in Escherichia coli.在大肠杆菌中外源内肽与外肽的蛋白质剪接的评价与比较。
FEBS Lett. 2011 Nov 4;585(21):3471-7. doi: 10.1016/j.febslet.2011.10.005. Epub 2011 Oct 10.