G.B. Elyakov Pacific Institute of Bioorganic Chemistry of the Far-Eastern Branch of the Russian Academy of Sciences, Prospekt 100 Let Vladivostoku 159, 690022, Vladivostok, Russia.
Antonie Van Leeuwenhoek. 2013 Jan;103(1):69-77. doi: 10.1007/s10482-012-9787-y. Epub 2012 Sep 4.
A novel Gram-negative, facultatively anaerobic and motile bacterial strain, designated KMM 6351(T), was isolated from the sea urchin Strongylocentrotus intermedius and examined using a polyphasic taxonomic approach. A phylogenetic analysis based on 16S rRNA gene sequencing revealed that the strain formed a distinct phyletic line in the class Gammaproteobacteria and was most closely related to the genera Aliivibrio, Photobacterium and Vibrio. Strain KMM 6351(T) grows at 4-40 °C and with 0.5-12 % NaCl and decomposes aesculin, agar, gelatin, starch, chitin and DNA. The DNA G+C content of the strain was determined to be 46.1 mol%. The prevalent fatty acids were found to be C(16:0), C(18:1) ω7c, C(12:0) 3-OH and summed feature 3 (comprising C(16:1) ω7c and/or iso-C(15:0) 2-OH fatty acids). The major polar lipids were determined to be diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and an unidentified aminolipid. The predominant ubiquinone was found to be Q-8. The results of the phenotypic, chemotaxonomic and genotypic analyses clearly indicated that the novel strain should be assigned to a new genus and species within the class γ-Proteobacteria for which the name Echinimonas agarilytica gen. nov., sp. nov. is proposed. The type strain is KMM 6351(T) (=KCTC 22996(T) = LMG 25420(T)).
一株新型革兰氏阴性、兼性厌氧、运动的细菌菌株,被命名为 KMM 6351(T),从海胆中分离出来,并采用多相分类学方法进行了研究。基于 16S rRNA 基因测序的系统发育分析表明,该菌株在γ变形菌纲中形成了一个独特的进化枝,与 Aliivibrio、Photobacterium 和 Vibrio 属最为密切相关。菌株 KMM 6351(T)在 4-40°C 和 0.5-12%的 NaCl 下生长,并分解秦皮素、琼脂、明胶、淀粉、几丁质和 DNA。该菌株的 DNA G+C 含量为 46.1 mol%。主要脂肪酸为 C(16:0)、C(18:1) ω7c、C(12:0) 3-OH 和特征脂肪酸 3(包含 C(16:1) ω7c 和/或 iso-C(15:0) 2-OH 脂肪酸)。主要极性脂为双磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺和一种未鉴定的胺脂。主要的醌类为 Q-8。表型、化学分类和基因型分析的结果清楚地表明,该新菌株应归属于γ-变形菌纲的一个新属和新种,因此提议将其命名为 Echinimonas agarilytica 属,种名 nov.。模式菌株为 KMM 6351(T)(=KCTC 22996(T)=LMG 25420(T))。