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在寒冷、间歇性投喂核苷酸的环境中表现出的达尔文行为。

Darwinian behavior in a cold, sporadically fed pool of ribonucleotides.

机构信息

Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, Colorado 80309-0347, USA.

出版信息

Astrobiology. 2012 Sep;12(9):870-83. doi: 10.1089/ast.2012.0860. Epub 2012 Sep 4.

Abstract

A testable, explicit origin for Darwinian behavior, feasible on a chaotic early Earth, would aid origins discussion. Here I show that a pool receiving unreliable supplies of unstable ribonucleotide precursors can recurrently fill this role. By using numerical integration, the differential equations governing a sporadically fed pool are solved, yielding quantitative constraints for the proliferation of molecules that also have a chemical phenotype. For example, templated triphosphate nucleotide joining is >10(4) too slow, suggesting that a group more reactive than pyrophosphate activated primordial nucleotides. However, measured literature rates are sufficient if the Initial Darwinian Ancestor (IDA) resembles a 5'-5' cofactor-like dinucleotide RNA, synthesized via activation with a phosphorimidazolide-like group. A sporadically fed pool offers unforeseen advantages; for example, the pool hosts a novel replicator which is predominantly unpaired, even though it replicates. Such free template is optimized for effective selection during its replication. Pool nucleotides are also subject to a broadly based selection that impels the population toward replication, effective selection, and Darwinian behavior. Such a primordial pool may have left detectable modern traces. A sporadically fed ribonucleotide pool also fits a recognizable early Earth environment, has recognizable modern descendants, and suits the early shape of the phylogenetic tree of Earthly life. Finally, analysis points to particular data now needed to refine the hypothesis. Accordingly, a kinetically explicit chemical hypothesis for a terran IDA can be justified, and informative experiments seem readily accessible.

摘要

一个可测试的、明确的达尔文行为起源,如果在混沌的早期地球是可行的,将有助于起源的讨论。在这里,我表明,一个接收不稳定核糖核苷酸前体不可靠供应的池,可以反复起到这种作用。通过使用数值积分,解决了间歇性供应池的微分方程,为具有化学表型的分子的增殖提供了定量约束。例如,模板三磷酸核苷酸连接的速度太慢,超过 10(4),表明比焦磷酸更活跃的基团激活原始核苷酸。然而,如果初始达尔文祖先 (IDA) 类似于 5'-5' 辅助因子样二核苷酸 RNA,通过激活类似磷酰亚咪唑的基团合成,那么测量的文献速率是足够的。间歇性供应的池提供了意想不到的优势;例如,该池容纳了一种新型复制子,它主要是未配对的,尽管它在复制。这种游离模板优化了在复制过程中的有效选择。池核苷酸也受到广泛的选择,促使种群向复制、有效选择和达尔文行为发展。这样的原始池可能会留下可检测的现代痕迹。间歇性供应的核糖核苷酸池也符合可识别的早期地球环境,具有可识别的现代后代,并适合地球生命系统发育树的早期形状。最后,分析指出了现在需要细化假设的特定数据。因此,可以为陆地 IDA 提出一个明确动力学的化学假设,并且似乎可以很容易地进行有启发性的实验。

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本文引用的文献

1
Phylogeny and beyond: Scientific, historical, and conceptual significance of the first tree of life.
Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1011-8. doi: 10.1073/pnas.1109716109. Epub 2012 Jan 17.
2
Small aminoacyl transfer centers at GU within a larger RNA.
RNA Biol. 2012 Jan;9(1):59-66. doi: 10.4161/rna.9.1.18039. Epub 2012 Jan 1.
3
The meaning of a minuscule ribozyme.
Philos Trans R Soc Lond B Biol Sci. 2011 Oct 27;366(1580):2902-9. doi: 10.1098/rstb.2011.0139.
4
Efficient enzyme-free copying of all four nucleobases templated by immobilized RNA.
Nat Chem. 2011 Jul 10;3(8):603-8. doi: 10.1038/nchem.1086.
5
A salt-water reservoir as the source of a compositionally stratified plume on Enceladus.
Nature. 2011 Jun 22;474(7353):620-2. doi: 10.1038/nature10175.
6
Ice as a protocellular medium for RNA replication.
Nat Commun. 2010 Sep 21;1:76. doi: 10.1038/ncomms1076.
7
Getting past the RNA world: the initial Darwinian ancestor.
Cold Spring Harb Perspect Biol. 2011 Apr 1;3(4):a003590. doi: 10.1101/cshperspect.a003590.
8
Re-capping the message.
Trends Biochem Sci. 2009 Sep;34(9):435-42. doi: 10.1016/j.tibs.2009.05.003. Epub 2009 Sep 2.
9
Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions.
Nature. 2009 May 14;459(7244):239-42. doi: 10.1038/nature08013.
10
Information, probability, and the abundance of the simplest RNA active sites.
Front Biosci. 2008 May 1;13:6060-71. doi: 10.2741/3137.

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