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蛋白质合成的延迟降低了 mRNA 和蛋白质波动之间的相关性。

Delayed protein synthesis reduces the correlation between mRNA and protein fluctuations.

机构信息

Department of Mathematical Sciences, Montana State University, Bozeman, Montana.

Department of Applied Mathematics and Statistics, Comenius University, Bratislava, Slovakia.

出版信息

Biophys J. 2012 Aug 8;103(3):377-385. doi: 10.1016/j.bpj.2012.06.025.

Abstract

Recent experimental results indicate that, in single Escherichia coli cells, the fluctuations in mRNA level are uncorrelated with those of protein. However, a basic two-stage model for prokaryotic gene expression suggests that there ought to be a degree of correlation between the two. Therefore, it is important to investigate realistic modifications of the basic model that have the potential to reduce the theoretical level of the correlation. In this work, we focus on translational and reporter maturation delay, reporting that its introduction into the two-stage model reduces the cross correlation between instantaneous mRNA and protein levels. Our results indicate that the experimentally observed sample correlation coefficient between mRNA and protein levels may increase if the protein measurements are shifted back in time by the value of the delay.

摘要

最近的实验结果表明,在单个大肠杆菌细胞中,mRNA 水平的波动与蛋白质的波动无关。然而,原核基因表达的基本两阶段模型表明,两者之间应该存在一定程度的相关性。因此,研究基本模型的现实修正具有降低理论相关水平的潜力是很重要的。在这项工作中,我们专注于翻译和报告基因成熟延迟,报告表明将其引入两阶段模型会降低瞬时 mRNA 和蛋白质水平之间的交叉相关。我们的结果表明,如果将蛋白质测量值向后延迟延迟值,实验观察到的 mRNA 和蛋白质水平之间的样本相关系数可能会增加。

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本文引用的文献

1
Role of delay in the stochastic creation process.
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Aug;84(2 Pt 1):021128. doi: 10.1103/PhysRevE.84.021128. Epub 2011 Aug 18.
2
RNA mimics of green fluorescent protein.
Science. 2011 Jul 29;333(6042):642-6. doi: 10.1126/science.1207339.
3
Exact and approximate distributions of protein and mRNA levels in the low-copy regime of gene expression.
J Math Biol. 2012 Apr;64(5):829-54. doi: 10.1007/s00285-011-0433-5. Epub 2011 Jun 8.
4
Intrinsic noise in stochastic models of gene expression with molecular memory and bursting.
Phys Rev Lett. 2011 Feb 4;106(5):058102. doi: 10.1103/PhysRevLett.106.058102. Epub 2011 Feb 2.
5
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells.
Science. 2010 Jul 30;329(5991):533-8. doi: 10.1126/science.1188308.
6
Fluorescent proteins and their applications in imaging living cells and tissues.
Physiol Rev. 2010 Jul;90(3):1103-63. doi: 10.1152/physrev.00038.2009.
7
A single molecule view of gene expression.
Trends Cell Biol. 2009 Nov;19(11):630-7. doi: 10.1016/j.tcb.2009.08.008. Epub 2009 Oct 8.
8
Intrinsic fluctuations in stochastic delay systems: theoretical description and application to a simple model of gene regulation.
Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Aug;80(2 Pt 1):021909. doi: 10.1103/PhysRevE.80.021909. Epub 2009 Aug 12.
9
mRNA-Seq whole-transcriptome analysis of a single cell.
Nat Methods. 2009 May;6(5):377-82. doi: 10.1038/nmeth.1315. Epub 2009 Apr 6.
10
Analytical distributions for stochastic gene expression.
Proc Natl Acad Sci U S A. 2008 Nov 11;105(45):17256-61. doi: 10.1073/pnas.0803850105. Epub 2008 Nov 6.

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