Department of Mathematical Sciences, Montana State University, Bozeman, Montana.
Department of Applied Mathematics and Statistics, Comenius University, Bratislava, Slovakia.
Biophys J. 2012 Aug 8;103(3):377-385. doi: 10.1016/j.bpj.2012.06.025.
Recent experimental results indicate that, in single Escherichia coli cells, the fluctuations in mRNA level are uncorrelated with those of protein. However, a basic two-stage model for prokaryotic gene expression suggests that there ought to be a degree of correlation between the two. Therefore, it is important to investigate realistic modifications of the basic model that have the potential to reduce the theoretical level of the correlation. In this work, we focus on translational and reporter maturation delay, reporting that its introduction into the two-stage model reduces the cross correlation between instantaneous mRNA and protein levels. Our results indicate that the experimentally observed sample correlation coefficient between mRNA and protein levels may increase if the protein measurements are shifted back in time by the value of the delay.
最近的实验结果表明,在单个大肠杆菌细胞中,mRNA 水平的波动与蛋白质的波动无关。然而,原核基因表达的基本两阶段模型表明,两者之间应该存在一定程度的相关性。因此,研究基本模型的现实修正具有降低理论相关水平的潜力是很重要的。在这项工作中,我们专注于翻译和报告基因成熟延迟,报告表明将其引入两阶段模型会降低瞬时 mRNA 和蛋白质水平之间的交叉相关。我们的结果表明,如果将蛋白质测量值向后延迟延迟值,实验观察到的 mRNA 和蛋白质水平之间的样本相关系数可能会增加。