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基因表达低拷贝状态下蛋白质和mRNA水平的精确与近似分布。

Exact and approximate distributions of protein and mRNA levels in the low-copy regime of gene expression.

作者信息

Bokes Pavol, King John R, Wood Andrew T A, Loose Matthew

机构信息

Centre for Mathematical Medicine and Biology, School of Mathematical Sciences, University of Nottingham, Nottingham NG7 2RD, UK.

出版信息

J Math Biol. 2012 Apr;64(5):829-54. doi: 10.1007/s00285-011-0433-5. Epub 2011 Jun 8.

Abstract

Gene expression at the single-cell level incorporates reaction mechanisms which are intrinsically stochastic as they involve molecular species present at low copy numbers. The dynamics of these mechanisms can be described quantitatively using stochastic master-equation modelling; in this paper we study a generic gene-expression model of this kind which explicitly includes the representations of the processes of transcription and translation. For this model we determine the generating function of the steady-state distribution of mRNA and protein counts and characterise the underlying probability law using a combination of analytic, asymptotic and numerical approaches, finding that the distribution may assume a number of qualitatively distinct forms. The results of the analysis are suitable for comparison with single-molecule resolution gene-expression data emerging from recent experimental studies.

摘要

单细胞水平上的基因表达包含本质上具有随机性的反应机制,因为它们涉及低拷贝数存在的分子种类。这些机制的动力学可以使用随机主方程建模进行定量描述;在本文中,我们研究了这样一种通用基因表达模型,该模型明确包含转录和翻译过程的表示。对于这个模型,我们确定了mRNA和蛋白质计数的稳态分布的生成函数,并使用解析、渐近和数值方法相结合的方式表征潜在的概率定律,发现该分布可能呈现多种定性上不同的形式。分析结果适合与近期实验研究中出现的单分子分辨率基因表达数据进行比较。

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