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通过波钉扎实现确定性与随机性的细胞极化。

Deterministic versus stochastic cell polarisation through wave-pinning.

机构信息

Computational & Systems Biology, John Innes Centre, Norwich Research Park, Norwich, UK.

出版信息

Bull Math Biol. 2012 Nov;74(11):2570-99. doi: 10.1007/s11538-012-9766-5. Epub 2012 Sep 7.

Abstract

Cell polarization is an important part of the response of eukaryotic cells to stimuli, and forms a primary step in cell motility, differentiation, and many cellular functions. Among the important biochemical players implicated in the onset of intracellular asymmetries that constitute the early phases of polarization are the Rho GTPases, such as Cdc42, Rac, and Rho, which present high active concentration levels in a spatially localized manner. Rho GTPases exhibit positive feedback-driven interconversion between distinct active and inactive forms, the former residing on the cell membrane, and the latter predominantly in the cytosol. A deterministic model of the dynamics of a single Rho GTPase described earlier by Mori et al. exhibits sustained polarization by a wave-pinning mechanism. It remained, however, unclear how such polarization behaves at typically low cellular concentrations, as stochasticity could significantly affect the dynamics. We therefore study the low copy number dynamics of this model, using a stochastic kinetics framework based on the Gillespie algorithm, and propose statistical and analytic techniques which help us analyse the equilibrium behaviour of our stochastic system. We use local perturbation analysis to predict parameter regimes for initiation of polarity and wave-pinning in our deterministic system, and compare these predictions with deterministic and stochastic spatial simulations. Comparing the behaviour of the stochastic with the deterministic system, we determine the threshold number of molecules required for robust polarization in a given effective reaction volume. We show that when the molecule number is lowered wave-pinning behaviour is lost due to an increasingly large transition zone as well as increasing fluctuations in the pinning position, due to which a broadness can be reached that is unsustainable, causing the collapse of the wave, while the variations in the high and low equilibrium levels are much less affected.

摘要

细胞极化是真核细胞对刺激做出反应的重要组成部分,也是细胞运动、分化和许多细胞功能的初始步骤。在构成极化早期阶段的细胞内不对称性的起始中,涉及到重要的生化因子,如 Rho GTPases(如 Cdc42、Rac 和 Rho),它们以空间局部化的方式呈现出高活性浓度水平。Rho GTPases 表现出正反馈驱动的不同活性和非活性形式之间的转换,前者位于细胞膜上,后者主要位于细胞质中。Mori 等人之前描述的单个 Rho GTPase 的动力学确定性模型通过波钉扎机制表现出持续的极化。然而,在典型的低细胞浓度下,这种极化行为如何表现尚不清楚,因为随机性可能会显著影响动力学。因此,我们使用基于 Gillespie 算法的随机动力学框架来研究该模型的低拷贝数动力学,并提出有助于我们分析随机系统平衡行为的统计和分析技术。我们使用局部扰动分析来预测我们的确定性系统中极性和波钉扎起始的参数范围,并将这些预测与确定性和随机空间模拟进行比较。通过比较随机系统和确定性系统的行为,我们确定了在给定有效反应体积中实现稳健极化所需的分子数量的阈值。我们表明,当分子数量降低时,由于较大的过渡区以及钉扎位置的波动增加,波钉扎行为会丢失,因此可以达到一个不稳定的宽度,导致波的崩溃,而高平衡水平和低平衡水平的变化受影响较小。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c2/3480592/978fe8f7fdca/11538_2012_9766_Fig1_HTML.jpg

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