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全基因组关联研究中与疾病相关的常见遗传变异在前列腺癌和类风湿关节炎中是互斥的。

Common genetic variants associated with disease from genome-wide association studies are mutually exclusive in prostate cancer and rheumatoid arthritis.

机构信息

Arthritis Research UK Epidemiology Unit, School of Translational Medicine, University of Manchester, Manchester, UK.

出版信息

BJU Int. 2013 Jun;111(7):1148-55. doi: 10.1111/j.1464-410X.2012.11492.x. Epub 2012 Sep 18.

Abstract

UNLABELLED

WHAT'S KNOWN ON THE SUBJECT? AND WHAT DOES THE STUDY ADD?: The link between inflammation and cancer has long been reported and inflammation is thought to play a role in the pathogenesis of many cancers, including prostate cancer (PrCa). Over the last 5 years, genome-wide association studies (GWAS) have reported numerous susceptibility loci that predispose individuals to many different traits. The present study aims to ascertain if there are common genetic risk profiles that might predispose individuals to both PrCa and the autoimmune inflammatory condition, rheumatoid arthritis. These results could have potential public heath impact in terms of screening and chemoprevention.

OBJECTIVES

To investigate if potential common pathways exist for the pathogenesis of autoimmune disease and prostate cancer (PrCa). To ascertain if the single nucleotide polymorphisms (SNPs) reported by genome-wide association studies (GWAS) as being associated with susceptibility to PrCa are also associated with susceptibility to the autoimmune disease rheumatoid arthritis (RA).

MATERIALS AND METHODS

The original Wellcome Trust Case Control Consortium (WTCCC) UK RA GWAS study was expanded to include a total of 3221 cases and 5272 controls. In all, 37 germline autosomal SNPs at genome-wide significance associated with PrCa risk were identified from a UK/Australian PrCa GWAS. Allele frequencies were compared for these 37 SNPs between RA cases and controls using a chi-squared trend test and corrected for multiple testing (Bonferroni).

RESULTS

In all, 33 SNPs were able to be analysed in the RA dataset. Proxies could not be located for the SNPs in 3q26, 5p15 and for two SNPs in 17q12. After applying a Bonferroni correction for the number of SNPs tested, the SNP mapping to CCHCR1 (rs130067) retained statistically significant evidence for association (P = 6 × 10(-4) ; odds ratio [OR] = 1.15, 95% CI: 1.06-1.24); this has also been associated with psoriasis. However, further analyses showed that the association of this allele was due to confounding by RA-associated HLA-DRB1 alleles.

CONCLUSIONS

There is currently no evidence that SNPs associated with PrCa at genome-wide significance are associated with the development of RA. Studies like this are important in determining if common genetic risk profiles might predispose individuals to many diseases, which could have implications for public health in terms of screening and chemoprevention.

摘要

目的

研究是否存在自身免疫性疾病和前列腺癌(PrCa)发病机制的共同潜在途径。确定全基因组关联研究(GWAS)报道的与 PrCa 易感性相关的单核苷酸多态性(SNP)是否也与自身免疫性疾病类风湿关节炎(RA)的易感性相关。

材料和方法

对英国风湿病遗传学协会(BSGR)的原始全基因组关联研究(WTCCC)英国 RA GWAS 研究进行了扩展,共纳入了 3221 例病例和 5272 例对照。从英国/澳大利亚前列腺癌 GWAS 中确定了与前列腺癌风险相关的 37 个全基因组显著相关的种系常染色体 SNP。使用卡方趋势检验比较这些 37 个 SNP 在 RA 病例和对照中的等位基因频率,并进行了多次检验校正(Bonferroni)。

结果

在所有的 RA 数据集中,共分析了 33 个 SNP。在 3q26、5p15 以及 17q12 中的两个 SNP 中,无法定位到 SNP 的替代品。在对所测试的 SNP 数量进行 Bonferroni 校正后,映射到 CCHCR1(rs130067)的 SNP 仍然具有统计学意义的关联证据(P=6×10(-4);优势比[OR]=1.15,95%CI:1.06-1.24);这也与银屑病有关。然而,进一步的分析表明,该等位基因的关联是由于 RA 相关 HLA-DRB1 等位基因的混杂所致。

结论

目前没有证据表明全基因组显著相关的与前列腺癌相关的 SNP 与 RA 的发生有关。像这样的研究对于确定常见的遗传风险谱是否可能使个体易患多种疾病是很重要的,这可能对筛查和化学预防方面的公共健康产生影响。

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