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Redox-linked conformational dynamics in apoptosis-inducing factor.凋亡诱导因子中与氧化还原相关的构象动力学
J Mol Biol. 2009 Jul 31;390(5):924-38. doi: 10.1016/j.jmb.2009.05.013. Epub 2009 May 15.
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Redox control of protein conformation in flavoproteins.氧化还原控制黄素蛋白中的蛋白质构象。
Antioxid Redox Signal. 2009 Jul;11(7):1741-66. doi: 10.1089/ars.2008.2348.
3
Structures of the multicomponent Rieske non-heme iron toluene 2,3-dioxygenase enzyme system.多组分赖氏非血红素铁甲苯2,3-双加氧酶酶系统的结构
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Redox-dependent changes in molecular properties of mitochondrial apoptosis-inducing factor.线粒体凋亡诱导因子分子特性的氧化还原依赖性变化
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5
Molecular mechanism of the redox-dependent interaction between NADH-dependent ferredoxin reductase and Rieske-type [2Fe-2S] ferredoxin.依赖NADH的铁氧化还原蛋白还原酶与 Rieske 型[2Fe-2S]铁氧化还原蛋白之间氧化还原依赖性相互作用的分子机制。
J Mol Biol. 2007 Oct 19;373(2):382-400. doi: 10.1016/j.jmb.2007.08.002. Epub 2007 Aug 19.
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Evolution of function in the "two dinucleotide binding domains" flavoproteins.“双二核苷酸结合结构域”黄素蛋白的功能进化
PLoS Comput Biol. 2007 Jul;3(7):e121. doi: 10.1371/journal.pcbi.0030121.
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Solving structures of protein complexes by molecular replacement with Phaser.使用Phaser通过分子置换法解析蛋白质复合物的结构。
Acta Crystallogr D Biol Crystallogr. 2007 Jan;63(Pt 1):32-41. doi: 10.1107/S0907444906045975. Epub 2006 Dec 13.
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Optimal description of a protein structure in terms of multiple groups undergoing TLS motion.基于经历TLS运动的多个基团对蛋白质结构进行的最优描述。
Acta Crystallogr D Biol Crystallogr. 2006 Apr;62(Pt 4):439-50. doi: 10.1107/S0907444906005270. Epub 2006 Mar 18.
9
Purification, crystallization and preliminary X-ray diffraction studies of the three components of the toluene 2,3-dioxygenase enzyme system.甲苯2,3-双加氧酶酶系统三种组分的纯化、结晶及初步X射线衍射研究
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10
Rieske business: structure-function of Rieske non-heme oxygenases.里斯克相关研究:里斯克非血红素加氧酶的结构与功能
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抑制电子转移到双氧水中的电子转移和电子转移复合物在甲苯双加氧酶的黄素腺嘌呤二核苷酸(FAD)依赖性还原酶组分中。

Suppression of electron transfer to dioxygen by charge transfer and electron transfer complexes in the FAD-dependent reductase component of toluene dioxygenase.

机构信息

Institut für Biologie, Strukturbiologie/Biochemie, Humboldt-Universität zu Berlin, D-10115 Berlin, Germany.

出版信息

J Biol Chem. 2012 Nov 2;287(45):38338-46. doi: 10.1074/jbc.M112.374918. Epub 2012 Sep 19.

DOI:10.1074/jbc.M112.374918
PMID:22992736
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3488102/
Abstract

The three-component toluene dioxygenase system consists of an FAD-containing reductase, a Rieske-type [2Fe-2S] ferredoxin, and a Rieske-type dioxygenase. The task of the FAD-containing reductase is to shuttle electrons from NADH to the ferredoxin, a reaction the enzyme has to catalyze in the presence of dioxygen. We investigated the kinetics of the reductase in the reductive and oxidative half-reaction and detected a stable charge transfer complex between the reduced reductase and NAD(+) at the end of the reductive half-reaction, which is substantially less reactive toward dioxygen than the reduced reductase in the absence of NAD(+). A plausible reason for the low reactivity toward dioxygen is revealed by the crystal structure of the complex between NAD(+) and reduced reductase, which shows that the nicotinamide ring and the protein matrix shield the reactive C4a position of the isoalloxazine ring and force the tricycle into an atypical planar conformation, both factors disfavoring the reaction of the reduced flavin with dioxygen. A rapid electron transfer from the charge transfer complex to electron acceptors further reduces the risk of unwanted side reactions, and the crystal structure of a complex between the reductase and its cognate ferredoxin shows a short distance between the electron-donating and -accepting cofactors. Attraction between the two proteins is likely mediated by opposite charges at one large patch of the complex interface. The stability, specificity, and reactivity of the observed charge transfer and electron transfer complexes are thought to prevent the reaction of reductase(TOL) with dioxygen and thus present a solution toward conflicting requirements.

摘要

三组分甲苯双加氧酶系统由一个含 FAD 的还原酶、一个 Rieske 型[2Fe-2S]铁氧还蛋白和一个 Rieske 型双加氧酶组成。含 FAD 的还原酶的任务是将电子从 NADH 转移到铁氧还蛋白,在有氧存在的情况下,该酶必须催化该反应。我们研究了还原酶在还原和氧化半反应中的动力学,并在还原半反应结束时检测到还原型还原酶与 NAD(+)之间存在稳定的电荷转移复合物,与没有 NAD(+)时的还原型还原酶相比,该复合物对双氧的反应性要低得多。复合物中 NAD(+)和还原型还原酶的晶体结构揭示了对双氧反应性低的一个合理原因,该结构表明,烟酰胺环和蛋白质基质屏蔽了异咯嗪环的反应性 C4a 位置,并迫使三环进入非典型的平面构象,这两个因素都不利于还原黄素与双氧的反应。电荷转移复合物向电子受体的快速电子转移进一步降低了不必要的副反应的风险,还原酶与其同源铁氧还蛋白之间复合物的晶体结构显示出电子供体和受体辅因子之间的短距离。两个蛋白质之间的吸引力可能是由复合物界面上一个大补丁上的相反电荷介导的。所观察到的电荷转移和电子转移复合物的稳定性、特异性和反应性被认为可以防止还原酶(TOL)与双氧的反应,从而为相互冲突的要求提供了一种解决方案。