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本文引用的文献

1
The Quantum Workings of the Rotating 64-Grid Genetic Code.旋转64格遗传密码的量子机制
Neuroquantology. 2011 Dec;9(4):728-746. doi: 10.14704/nq.2011.9.4.499.
2
The Rules of Variation Expanded, Implications for the Research on Compatible Genomics.《变异规则扩展:对兼容基因组学研究的启示》
Biosemiotics. 2011 May 12;2011:1-25. doi: 10.1007/s12304-011-9118-0.
3
The rules of variation: amino acid exchange according to the rotating circular genetic code.变则规则:氨基酸按照旋转循环遗传密码进行交换。
J Theor Biol. 2010 Jun 7;264(3):711-21. doi: 10.1016/j.jtbi.2010.03.046. Epub 2010 Apr 3.
4
Conversion of nucleotides sequences into genomic signals.将核苷酸序列转化为基因组信号。
J Cell Mol Med. 2002 Apr-Jun;6(2):279-303. doi: 10.1111/j.1582-4934.2002.tb00196.x.
5
Forces contributing to the conformational stability of proteins.
FASEB J. 1996 Jan;10(1):75-83. doi: 10.1096/fasebj.10.1.8566551.
6
A tetrahedral representation of poly-codon sequences and a possible origin of codon degeneracy.多密码子序列的四面体表示及密码子简并性的可能起源。
J Theor Biol. 1984 Jun 7;108(3):459-68. doi: 10.1016/s0022-5193(84)80046-6.

强调对称性的遗传密码的四面体表示法。

A Tetrahedral Representation of the Genetic Code Emphasizing Aspects of Symmetry.

作者信息

Castro-Chavez Fernando

机构信息

Department of Medicine, Baylor College of Medicine, Houston, Texas, USA; Independent Biotechnologist, Houston, Texas, USA.

出版信息

BIOcomplexity. 2012 Jun 29;2012(2):1-6. doi: 10.5048/BIO-C.2012.2.

DOI:10.5048/BIO-C.2012.2
PMID:22997604
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3445437/
Abstract

The genetic code is a mapping of 64 codons to 22 actions, including polypeptide chain initiation, termination, and incorporation of the twenty amino acids. The standard tabular representation is useful for looking up which amino acid is encoded by a particular codon, but says little about functional relationships in the code. The possibility of making sense of the code rather than simply enumerating its codon-to-action pairings therefore is appealing, and many have attempted to find geometric representations of the code that illuminate its functional organization. Here, I show that a regular tetrahedron with each of its four faces divided into sixteen equilateral triangles (for a total of 64 triangular 'cells') is a particularly apt geometry for representing the code. I apply five principles of symmetry and balance in order to assign codons to the triangular cells of the tetrahedral faces. These principles draw on various aspects of the genetic code and the twenty amino acids, making the final construct a positional balance of the amino acids and their functions rather than a re-analysis of them. The potential significance of this exercise, and others like it, is that this way of organizing the biological facts may provide new insights into them.

摘要

遗传密码是一种将64个密码子映射到22种作用的方式,这些作用包括多肽链的起始、终止以及20种氨基酸的掺入。标准的表格表示法有助于查找特定密码子编码哪种氨基酸,但对于密码中的功能关系却说明甚少。因此,理解密码而非仅仅列举其密码子与作用的配对的可能性很有吸引力,许多人试图找到能阐明其功能组织的密码几何表示法。在此,我表明一个正四面体,其四个面中的每一个都被划分为16个等边三角形(总共64个三角形“单元”)是一种特别适合表示该密码的几何形状。我应用五条对称和平衡原则,以便将密码子分配到四面体各面的三角形单元中。这些原则借鉴了遗传密码和20种氨基酸的各个方面,使得最终构建物成为氨基酸及其功能的位置平衡,而非对它们的重新分析。这种做法以及类似做法的潜在意义在于,这种组织生物学事实的方式可能会为它们提供新的见解。