• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

对超越流体动力学理论的膜嵌入蛋白扩散的贡献。

Contributions to membrane-embedded-protein diffusion beyond hydrodynamic theories.

作者信息

Camley Brian A, Brown Frank L H

机构信息

Department of Physics, University of California, Santa Barbara, California 93106, USA.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Jun;85(6 Pt 1):061921. doi: 10.1103/PhysRevE.85.061921. Epub 2012 Jun 25.

DOI:10.1103/PhysRevE.85.061921
PMID:23005141
Abstract

The diffusion coefficients of proteins embedded in a lipid membrane are traditionally described by the hydrodynamic Saffman-Delbrück theory, which predicts a weak dependence of the diffusion coefficient on protein radius, D∼lnR. Recent experiments have observed a stronger dependence, D∼1/R. This has led to speculation that the primary sources of drag on the protein are not hydrodynamic, but originate in coupling to other fields, such as lipid chain stretching or tilt. We discuss a generic model of a protein coupled to a nonconserved scalar order parameter (e.g., chain stretching), and show that earlier results may not be as universal as previously believed. In particular, we note that the drag depends on the way the protein-order parameter coupling is imposed. In this model, D∼1/R can be obtained if the protein is much larger than the order parameter correlation length. However, if we modify the model to include advection of the order parameter, which is a more appropriate assumption for a fluid membrane, we find that the entrainment of the order parameter by the protein's motion significantly changes the scaling of the diffusion coefficient. For parameters appropriate to protein diffusion, the Saffman-Delbrück-like scaling is restored, but with an effective radius for the protein that depends on the order parameter's correlation length. This qualitative difference suggests that hydrodynamic effects cannot be neglected in the computation of drag on a protein interacting with the membrane.

摘要

传统上,嵌入脂质膜中的蛋白质的扩散系数是由流体动力学的萨夫曼 - 德尔布吕克理论描述的,该理论预测扩散系数对蛋白质半径的依赖性较弱,即D∼lnR。最近的实验观察到更强的依赖性,即D∼1/R。这引发了一种推测,即蛋白质上的主要阻力来源不是流体动力学的,而是源于与其他场的耦合,例如脂质链的拉伸或倾斜。我们讨论了一个与非守恒标量序参量(例如链拉伸)耦合的蛋白质的通用模型,并表明早期结果可能不像以前认为的那样具有普遍性。特别是,我们注意到阻力取决于施加蛋白质 - 序参量耦合的方式。在这个模型中,如果蛋白质比序参量相关长度大得多,则可以得到D∼1/R。然而,如果我们修改模型以包括序参量的平流,这对于流体膜来说是一个更合适的假设,我们发现蛋白质运动对序参量的夹带显著改变了扩散系数的标度。对于适合蛋白质扩散的参数,类似萨夫曼 - 德尔布吕克的标度得以恢复,但蛋白质的有效半径取决于序参量的相关长度。这种定性差异表明,在计算与膜相互作用的蛋白质上的阻力时,流体动力学效应不能被忽略。

相似文献

1
Contributions to membrane-embedded-protein diffusion beyond hydrodynamic theories.对超越流体动力学理论的膜嵌入蛋白扩散的贡献。
Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Jun;85(6 Pt 1):061921. doi: 10.1103/PhysRevE.85.061921. Epub 2012 Jun 25.
2
Size-dependent diffusion of membrane inclusions.膜内含物的尺寸依赖性扩散。
Biophys J. 2006 Oct 1;91(7):2393-8. doi: 10.1529/biophysj.106.087031. Epub 2006 Jul 7.
3
Calculating hydrodynamic interactions for membrane-embedded objects.计算膜嵌入物体的流体动力学相互作用。
J Chem Phys. 2014 Sep 28;141(12):124711. doi: 10.1063/1.4896180.
4
Corrections to the Saffman-Delbruck mobility for membrane bound proteins.对膜结合蛋白的萨夫曼-德尔布吕克迁移率的修正。
Biophys J. 2007 Dec 1;93(11):L49-51. doi: 10.1529/biophysj.107.119222. Epub 2007 Sep 14.
5
Diffusing proteins on a fluctuating membrane: analytical theory and simulations.波动膜上的扩散蛋白:解析理论与模拟
Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Mar;81(3 Pt 1):031903. doi: 10.1103/PhysRevE.81.031903. Epub 2010 Mar 4.
6
Influence of hydrophobic mismatching on membrane protein diffusion.疏水错配对膜蛋白扩散的影响。
Biophys J. 2008 Aug;95(3):L25-7. doi: 10.1529/biophysj.108.136069. Epub 2008 May 23.
7
Lateral diffusion of membrane proteins.膜蛋白的侧向扩散。
J Am Chem Soc. 2009 Sep 9;131(35):12650-6. doi: 10.1021/ja902853g.
8
Mobility of extended bodies in viscous films and membranes.粘性薄膜和膜中伸展体的流动性。
Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Feb;69(2 Pt 1):021503. doi: 10.1103/PhysRevE.69.021503. Epub 2004 Feb 19.
9
Membrane-bound Turing patterns.膜结合图灵模式。
Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Dec;72(6 Pt 1):061912. doi: 10.1103/PhysRevE.72.061912. Epub 2005 Dec 19.
10
Curvature coupling dependence of membrane protein diffusion coefficients.膜蛋白扩散系数的曲率耦合依赖性
Langmuir. 2008 Feb 19;24(4):1254-61. doi: 10.1021/la702319q. Epub 2007 Dec 12.

引用本文的文献

1
Modeling Receptor Motility along Advecting Lipid Membranes.模拟受体沿平流脂质膜的运动。
Membranes (Basel). 2022 Jun 25;12(7):652. doi: 10.3390/membranes12070652.
2
Saffman-Delbrück and beyond: A pointlike approach.萨夫曼 - 德尔布吕克及其他:一种点状方法。
Eur Phys J E Soft Matter. 2019 Dec 17;42(12):156. doi: 10.1140/epje/i2019-11922-8.
3
Curvature correction to the mobility of fluid membrane inclusions.对流体膜包裹体迁移率的曲率校正。
Eur Phys J E Soft Matter. 2016 Oct;39(10):96. doi: 10.1140/epje/i2016-16096-3. Epub 2016 Oct 24.
4
Strong influence of periodic boundary conditions on lateral diffusion in lipid bilayer membranes.周期性边界条件对脂质双分子层膜中横向扩散的强烈影响。
J Chem Phys. 2015 Dec 28;143(24):243113. doi: 10.1063/1.4932980.
5
Diffusion in phospholipid bilayer membranes: dual-leaflet dynamics and the roles of tracer-leaflet and inter-leaflet coupling.磷脂双分子层膜中的扩散:双叶动力学以及示踪叶和叶间耦合的作用
Proc Math Phys Eng Sci. 2014 Jul 8;470(2167):20130843. doi: 10.1098/rspa.2013.0843.
6
Shape matters in protein mobility within membranes.形状在膜内蛋白质的流动性中很重要。
Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5083-7. doi: 10.1073/pnas.1321054111. Epub 2014 Mar 24.
7
Single-molecule studies reveal a hidden key step in the activation mechanism of membrane-bound protein kinase C-α.单分子研究揭示了膜结合蛋白激酶 C-α激活机制中的一个隐藏关键步骤。
Biochemistry. 2014 Mar 18;53(10):1697-713. doi: 10.1021/bi4016082. Epub 2014 Mar 7.
8
The PH domain of phosphoinositide-dependent kinase-1 exhibits a novel, phospho-regulated monomer-dimer equilibrium with important implications for kinase domain activation: single-molecule and ensemble studies.磷酸肌醇依赖激酶-1 的 PH 结构域表现出一种新颖的、受磷酸化调节的单体-二聚体平衡,这对激酶结构域的激活具有重要意义:单分子和整体研究。
Biochemistry. 2013 Jul 16;52(28):4820-9. doi: 10.1021/bi400488f. Epub 2013 Jul 9.
9
Lateral diffusion of peripheral membrane proteins on supported lipid bilayers is controlled by the additive frictional drags of (1) bound lipids and (2) protein domains penetrating into the bilayer hydrocarbon core.外周膜蛋白在支撑脂质双层上的侧向扩散受(1)结合脂质和(2)穿透双层烃核的蛋白域的附加摩擦阻力的控制。
Chem Phys Lipids. 2013 Jul-Aug;172-173:67-77. doi: 10.1016/j.chemphyslip.2013.04.005. Epub 2013 May 20.