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对超越流体动力学理论的膜嵌入蛋白扩散的贡献。

Contributions to membrane-embedded-protein diffusion beyond hydrodynamic theories.

作者信息

Camley Brian A, Brown Frank L H

机构信息

Department of Physics, University of California, Santa Barbara, California 93106, USA.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Jun;85(6 Pt 1):061921. doi: 10.1103/PhysRevE.85.061921. Epub 2012 Jun 25.

Abstract

The diffusion coefficients of proteins embedded in a lipid membrane are traditionally described by the hydrodynamic Saffman-Delbrück theory, which predicts a weak dependence of the diffusion coefficient on protein radius, D∼lnR. Recent experiments have observed a stronger dependence, D∼1/R. This has led to speculation that the primary sources of drag on the protein are not hydrodynamic, but originate in coupling to other fields, such as lipid chain stretching or tilt. We discuss a generic model of a protein coupled to a nonconserved scalar order parameter (e.g., chain stretching), and show that earlier results may not be as universal as previously believed. In particular, we note that the drag depends on the way the protein-order parameter coupling is imposed. In this model, D∼1/R can be obtained if the protein is much larger than the order parameter correlation length. However, if we modify the model to include advection of the order parameter, which is a more appropriate assumption for a fluid membrane, we find that the entrainment of the order parameter by the protein's motion significantly changes the scaling of the diffusion coefficient. For parameters appropriate to protein diffusion, the Saffman-Delbrück-like scaling is restored, but with an effective radius for the protein that depends on the order parameter's correlation length. This qualitative difference suggests that hydrodynamic effects cannot be neglected in the computation of drag on a protein interacting with the membrane.

摘要

传统上,嵌入脂质膜中的蛋白质的扩散系数是由流体动力学的萨夫曼 - 德尔布吕克理论描述的,该理论预测扩散系数对蛋白质半径的依赖性较弱,即D∼lnR。最近的实验观察到更强的依赖性,即D∼1/R。这引发了一种推测,即蛋白质上的主要阻力来源不是流体动力学的,而是源于与其他场的耦合,例如脂质链的拉伸或倾斜。我们讨论了一个与非守恒标量序参量(例如链拉伸)耦合的蛋白质的通用模型,并表明早期结果可能不像以前认为的那样具有普遍性。特别是,我们注意到阻力取决于施加蛋白质 - 序参量耦合的方式。在这个模型中,如果蛋白质比序参量相关长度大得多,则可以得到D∼1/R。然而,如果我们修改模型以包括序参量的平流,这对于流体膜来说是一个更合适的假设,我们发现蛋白质运动对序参量的夹带显著改变了扩散系数的标度。对于适合蛋白质扩散的参数,类似萨夫曼 - 德尔布吕克的标度得以恢复,但蛋白质的有效半径取决于序参量的相关长度。这种定性差异表明,在计算与膜相互作用的蛋白质上的阻力时,流体动力学效应不能被忽略。

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