Reister-Gottfried Ellen, Leitenberger Stefan M, Seifert Udo
II Institut für Theoretische Physik, Universität Stuttgart, D-70550 Stuttgart, Germany.
Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Mar;81(3 Pt 1):031903. doi: 10.1103/PhysRevE.81.031903. Epub 2010 Mar 4.
Using analytical calculations and computer simulations, we consider both the lateral diffusion of a membrane protein and the fluctuation spectrum of the membrane in which the protein is embedded. The membrane protein interacts with the membrane shape through its spontaneous curvature and bending rigidity. The lateral motion of the protein may be viewed as diffusion in an effective potential, hence, the effective mobility is always reduced compared to the case of free diffusion. Using a rigorous path-integral approach, we derive an analytical expression for the effective diffusion coefficient for small ratios of temperature and bending rigidity, which is the biologically relevant limit. Simulations show very good quantitative agreement with our analytical result. The analysis of the correlation functions contributing to the diffusion coefficient shows that the correlations between the stochastic force of the protein and the response in the membrane shape are responsible for the reduction. Our quantitative analysis of the membrane height correlation spectrum shows an influence of the protein-membrane interaction causing a distinctly altered wave-vector dependence compared to a free membrane. Furthermore, the time correlations exhibit the two relevant time scales of the system: that of membrane fluctuations and that of lateral protein diffusion with the latter typically much longer than the former. We argue that the analysis of the long-time decay of membrane height correlations can thus provide a new means to determine the effective diffusion coefficient of proteins in the membrane.
通过解析计算和计算机模拟,我们同时考虑了膜蛋白的横向扩散以及该蛋白所嵌入的膜的涨落谱。膜蛋白通过其自发曲率和弯曲刚度与膜的形状相互作用。蛋白的横向运动可视为在有效势场中的扩散,因此,与自由扩散的情况相比,有效迁移率总是降低的。使用严格的路径积分方法,我们推导出了在温度与弯曲刚度比值较小的情况下有效扩散系数的解析表达式,这是生物学相关的极限情况。模拟结果与我们的解析结果显示出非常好的定量一致性。对有助于扩散系数的相关函数的分析表明,蛋白的随机力与膜形状响应之间的相关性是导致扩散系数降低的原因。我们对膜高度相关谱的定量分析表明,蛋白 - 膜相互作用产生了影响,与自由膜相比,导致波矢依赖性明显改变。此外,时间相关性展现了系统的两个相关时间尺度:膜涨落的时间尺度和蛋白横向扩散的时间尺度,后者通常比前者长得多。我们认为,对膜高度相关性的长时间衰减的分析因此可以提供一种新的方法来确定膜中蛋白的有效扩散系数。